Factsheet for Zm00001d041839_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 20089766
plastid: 22065420
plastid: 23198870
plasma membrane: 27341663

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002501_P001
Zm00001d007577_P001
Zm00001d028880_P001
Zm00001d044925_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34430.1	Zm00001d028880_P001	AT2G47400.1	21798944
AT1G34430.1	Zm00001d044925_P001	AT2G47400.1	21798944
AT1G34430.1	Zm00001d002501_P001	AT3G17668.1	21798944
AT1G34430.1	Zm00001d007577_P001	AT3G18140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023606_P005	Maize	plastid	72.68	94.31
OQU78843	Sorghum	plastid	72.18	93.45
TraesCS5D01G126000.1	Wheat	cytosol	61.38	89.22
TraesCS5B01G116300.1	Wheat	golgi, unclear	67.28	86.93
TraesCS5A01G119600.1	Wheat	plastid	66.27	86.18
Os12t0182200-01	Rice	plastid	66.27	84.15
KRH34962	Soybean	plastid	56.83	71.86
KRG91819	Soybean	endoplasmic reticulum, nucleus	56.16	71.61
VIT_18s0072g01000.t01	Wine grape	plastid	57.34	71.28
Solyc11g017250.1.1	Tomato	plastid	55.65	70.51
PGSC0003DMT400023831	Potato	plastid	54.64	69.83
AT1G34430.1	Thale cress	plastid	54.13	69.03
HORVU5Hr1G038090.3	Barley	plastid	48.57	66.82
Zm00001d032224_P001	Maize	plastid	51.26	64.54
GSMUA_Achr3P17420_001	Banana	cytosol	26.14	62.25
Zm00001d020426_P001	Maize	plastid	47.39	61.89
Zm00001d050383_P001	Maize	plastid	53.12	60.34
Zm00001d053580_P002	Maize	mitochondrion	24.79	26.68
Zm00001d034531_P001	Maize	mitochondrion	21.92	26.37
Zm00001d016365_P002	Maize	mitochondrion	24.62	23.66
Zm00001d025258_P009	Maize	mitochondrion	15.18	20.18
Zm00001d040670_P004	Maize	mitochondrion	17.71	20.08
Zm00001d003923_P002	Maize	mitochondrion	15.01	18.82
CDY34925	Canola	mitochondrion	8.09	18.68
Bra040295.1-P	Field mustard	mitochondrion	8.09	18.68
TraesCS5D01G125900.1	Wheat	plastid	1.85	3.61
CDY17299	Canola	cytosol, plastid	3.54	3.16
CDY69187	Canola	cytosol, nucleus	3.2	3.02

Protein Annotations

EntrezGene:100192900	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10
MapMan:5.1.2.2.2	UniProt:A0A1D6MYM9	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089
InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	ProteinID:ONM33806.1	PFAM:PF00198	PFAM:PF00364
PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151
PANTHER:PTHR23151:SF61	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI0004DE91DA
EnsemblPlantsGene:Zm00001d041839	EnsemblPlants:Zm00001d041839_P001	EnsemblPlants:Zm00001d041839_T001	SEG:seg	:	:

Description

Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex chloroplastic

Coordinates

chr3:+:140023603..140029825

Molecular Weight (calculated)

63413.8 Da

IEP (calculated)

9.019

GRAVY (calculated)

-0.233

Length

593 amino acids

Sequence
(BLAST)

001: MARAKEDEQI MGIDLESCNL AKRSFYDAMQ HDILEIWVAT TKHQGGKRKE YWRKPWACWS NPQSRVSSRS DEPKPSYPSS SSANPPRLRY SQGSARQLQQ
101: QHQQARSSHQ PTTISSDSSQ ILPPTLHFPP LPRHPAMAGL LHLQSTLLPS ASALRRRAGV PVPSSSRRRC RIEAKIREIF MPALSSTMTE GKIVSWTAAE
201: GDRLAKGDPV VVVESDKADM DVETFYDGFL AAVLVPAGDS APVGSAIALL AESEEDIPVA QSQAASFSST SPLPSPPQET AAQEASPSPP PPPPPGPVSV
301: SAPTPPLPAT QGERVVASPY AKKLAKDLGV DLFSVTGSGP CGRIVAKDVE AALAAPKKAA PVTAPRPDVP LGSTVPFTTM QGAVSKNMVE SLAIPTFRVG
401: YTITTDALDQ LYKKIKSKGV TMTALLAKAT AMALVQHPVV NSSCRDGKSF TYSSSINIAV AVAIDGGLIT PVLQDADKLD IYSLSRKWKE LVDKARAKQL
501: QPHEYNSGTF TLSNLGMFGV DRFDAILPPG TGAIMAVGAS EPTIVGTKDG RIGIKNQMQV NVTADHRVIY GADLAAFLQT LAKIIEDPKD LTF

Best Arabidopsis Sequence Match ( AT1G34430.1 )
(BLAST)

001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Arabidopsis Description

EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.