Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12747 | Sorghum | plastid | 66.67 | 40.0 |
| Os04t0589200-01 | Rice | plastid | 65.38 | 38.64 |
| TraesCS2A01G451100.1 | Wheat | plastid | 64.1 | 38.46 |
| TraesCS2B01G472600.1 | Wheat | plastid | 64.1 | 38.46 |
| TraesCS2D01G450800.1 | Wheat | plastid | 64.1 | 38.46 |
| VIT_15s0021g00250.t01 | Wine grape | cytosol | 50.0 | 36.45 |
| HORVU2Hr1G105520.1 | Barley | cytosol, plastid | 64.1 | 35.71 |
| PGSC0003DMT400040427 | Potato | plastid | 52.56 | 30.37 |
| Solyc06g051160.2.1 | Tomato | plastid | 52.56 | 30.37 |
| KRH73492 | Soybean | plastid | 50.0 | 28.06 |
| AT3G17668.1 | Thale cress | plastid | 47.44 | 27.41 |
| CDY46888 | Canola | mitochondrion | 46.15 | 26.47 |
| GSMUA_Achr2P18190_001 | Banana | plastid | 47.44 | 25.17 |
Protein Annotations
| EnsemblPlants:Zm00001d002501_P001 | EnsemblPlants:Zm00001d002501_T001 | EnsemblPlantsGene:Zm00001d002501 | InterPro:HSP_DnaJ_Cys-rich_dom_sf | PANTHER:PTHR15852 | PANTHER:PTHR15852:SF30 |
| ProteinID:ONM14554.1 | SUPFAM:SSF57938 | UniParc:UPI000843518D | UniProt:A0A1D6E1K5 | MapMan:35.2 | : |
Description
DnaJ/Hsp40 cysteine-rich domain superfamily protein
Coordinates
chr2:+:14135350..14155809
Molecular Weight (calculated)
8926.7 Da
IEP (calculated)
7.967
GRAVY (calculated)
-0.355
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MLLNYIVIHQ RDVYLYSSNF GLGSTGRTNH ADVAMLPNGE WPQWCRICGG SGLDYCLRCH GTGEYREPMG FHFTVQRK
001: MAVNACLSPP EMMAVRPGEG VPNSKSTQGK TRLYLTKPSW IVRTQSGAKT CMKSKAKGRC VICHGSGRVD CFNCCGKGRT NCVDVEMLPR GEWPKWCKSC
101: GGSGLSDCSR CLGTGEYRYI MGFRFLNQND DADPQ
101: GGSGLSDCSR CLGTGEYRYI MGFRFLNQND DADPQ
Arabidopsis Description
ENAENA [Source:UniProtKB/TrEMBL;Acc:A0A178VIM6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.