Factsheet for Zm00001d040670_P004

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02874	Sorghum	mitochondrion	90.44	90.44
TraesCS2D01G073400.1	Wheat	mitochondrion	71.89	74.02
TraesCS2A01G074700.1	Wheat	nucleus	72.28	73.97
HORVU2Hr1G012440.1	Barley	cytosol	61.19	72.56
VIT_05s0077g02080.t01	Wine grape	cytosol	53.35	60.26
AT3G06850.1	Thale cress	mitochondrion, plastid	52.77	57.14
GSMUA_Achr10P...	Banana	mitochondrion	57.36	56.5
CDX74077	Canola	mitochondrion, plastid	51.63	56.49
PGSC0003DMT400029466	Potato	mitochondrion	53.73	55.64
CDY08029	Canola	mitochondrion	51.43	55.46
Solyc01g066520.2.1	Tomato	plastid	53.15	55.05
KRH02272	Soybean	mitochondrion	53.92	54.76
KRH50815	Soybean	mitochondrion	53.35	54.17
Bra001220.1-P	Field mustard	mitochondrion	50.29	53.24
Zm00001d020426_P001	Maize	plastid	21.22	24.45
Zm00001d032224_P001	Maize	plastid	21.03	23.35
Zm00001d023606_P005	Maize	plastid	20.08	22.98
Zm00001d034531_P001	Maize	mitochondrion	21.03	22.31
Zm00001d053580_P002	Maize	mitochondrion	22.94	21.78
Zm00001d050383_P001	Maize	plastid	20.84	20.88
Zm00001d016365_P002	Maize	mitochondrion	23.14	19.61
Zm00001d025258_P009	Maize	mitochondrion	16.44	19.28
Zm00001d003923_P002	Maize	mitochondrion	16.63	18.39
Zm00001d041839_P001	Maize	plastid	20.08	17.71

Protein Annotations

KEGG:00280+2.3.1.168	KEGG:00640+2.3.1.168	EntrezGene:100283617	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100
Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:4.2.7.2.2	UniProt:B6TJY4	InterPro:BCKADH_E2	EMBL:BT063533
InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	EMBL:EU965299	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009605
GO:GO:0009628	GO:GO:0009646	GO:GO:0009744	GO:GO:0009987	GO:GO:0009991	GO:GO:0016407
GO:GO:0016740	GO:GO:0016746	GO:GO:0043617	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213
InterPro:IPR036625	ProteinID:ONM31764.1	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189
PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR43178	PANTHER:PTHR43178:SF5	SUPFAM:SSF47005
SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI000182E2E5	EnsemblPlantsGene:Zm00001d040670	EnsemblPlants:Zm00001d040670_P004
EnsemblPlants:Zm00001d040670_T004	SEG:seg	:	:	:	:

Description

Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex mitochondrial

Coordinates

chr3:+:57107159..57111912

Molecular Weight (calculated)

56793.4 Da

IEP (calculated)

8.159

GRAVY (calculated)

-0.140

Length

523 amino acids

Sequence
(BLAST)

001: MAWARLASRS RLRPAASAAG RSRHASTPAP PPPPSPPTTR TVPAATSAPP LRRLLLLPRH RFADATPSAS TAWLLGARWR QGHGRRCFAS AAYPAQATPG
101: EASELVDVPL AQTGEGIAEC ELLRWFVAEG DQVDEFQPLC EVQSDKATIE ITSRFKGKVH KIHFVPGDIV KVGETLLKMV VGDSQIVSPD NIVPSAGKSL
201: GVESAVFSSE GNVPGGNLST PAVRHLAKQY GISINEIVGT GKDGRVLKED VLNYAVSKGV CKQQSLASEG NIGQVELLEE GKALLDEDFY EDKKILLRGY
301: QRSMVKSMSL AAKVPHFHYL EEINCDSLVQ LKTTFQNENK DQTIKHTFLP FLIKSLSMAL SKYPMLNSSF IEETNEVVFK GPHNIGVAMA TTHGLVVPNI
401: KKVQSLSILE ITKELARLHE MASQNRLSAA DIEGGTITLS NIGAIGGKFG SPLLNLPEVA IIALGRIQKL PRFDDDENVY PSSIINVTVG ADHRVVDGAT
501: VARFCNEWKS LVEKPELLLL HMR

Best Arabidopsis Sequence Match ( AT3G06850.2 )
(BLAST)

001: MIARRIWRSH RFLRPFSSSS VCSPPFRVPE YLSQSSSSPA SRPFFVHPPT LMKWGGGSRS WFSNEAMATD SNSGLIDVPL AQTGEGIAEC ELLKWFVKEG
101: DSVEEFQPLC EVQSDKATIE ITSRFKGKVA LISHSPGDII KVGETLVRLA VEDSQDSLLT TDSSEIVTLG GSKQGTENLL GALSTPAVRN LAKDLGIDIN
201: VITGTGKDGR VLKEDVLRFS DQKGFVTDSV SSEHAVIGGD SVSTKASSNF EDKTVPLRGF SRAMVKTMTM ATSVPHFHFV EEINCDSLVE LKQFFKENNT
301: DSTIKHTFLP TLIKSLSMAL TKYPFVNSCF NAESLEIILK GSHNIGVAMA TEHGLVVPNI KNVQSLSLLE ITKELSRLQH LAANNKLNPE DVTGGTITLS
401: NIGAIGGKFG SPLLNLPEVA IIALGRIEKV PKFSKEGTVY PASIMMVNIA ADHRVLDGAT VARFCCQWKE YVEKPELLML QMR

Arabidopsis Description

BCE2Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M7Z1]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.