Factsheet for Solyc01g066520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029466	Potato	mitochondrion	95.84	95.84
VIT_05s0077g02080.t01	Wine grape	cytosol	57.23	62.42
CDX74077	Canola	mitochondrion, plastid	54.65	57.74
AT3G06850.1	Thale cress	mitochondrion, plastid	55.05	57.56
KRH02272	Soybean	mitochondrion	58.61	57.48
KRH50815	Soybean	mitochondrion	58.22	57.09
CDY08029	Canola	mitochondrion	54.46	56.7
HORVU2Hr1G012440.1	Barley	cytosol	48.12	55.1
Bra001220.1-P	Field mustard	mitochondrion	53.07	54.25
EES02874	Sorghum	mitochondrion	55.45	53.54
Zm00001d040670_P004	Maize	mitochondrion	55.05	53.15
TraesCS2D01G073400.1	Wheat	mitochondrion	52.28	51.97
TraesCS2A01G074700.1	Wheat	nucleus	51.88	51.27
GSMUA_Achr10P...	Banana	mitochondrion	53.66	51.04
Solyc05g009530.2.1	Tomato	plastid	21.58	23.75
Solyc11g017250.1.1	Tomato	plastid	21.78	23.5
Solyc12g005080.1.1	Tomato	nucleus	17.03	23.24
Solyc07g006790.2.1	Tomato	plastid	24.75	22.6
Solyc07g064800.2.1	Tomato	extracellular, nucleus	18.61	20.09
Solyc11g007720.1.1	Tomato	nucleus, unclear	21.58	16.93

Protein Annotations

KEGG:00280+2.3.1.168	KEGG:00640+2.3.1.168	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10
Gene3D:4.10.320.10	MapMan:4.2.7.2.2	InterPro:BCKADH_E2	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009605	GO:GO:0009628	GO:GO:0009646	GO:GO:0009744	GO:GO:0009987
GO:GO:0009991	GO:GO:0016407	GO:GO:0016740	GO:GO:0016746	GO:GO:0043617	InterPro:IPR000089
InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	UniProt:K4AWQ5	PFAM:PF00198	PFAM:PF00364
PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR43178
PANTHER:PTHR43178:SF5	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	EnsemblPlantsGene:Solyc01g066520.2
EnsemblPlants:Solyc01g066520.2.1	UniParc:UPI0002762B52	SEG:seg	:	:	:

Description

Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Source:Projected from Arabidopsis thaliana (AT3G06850) UniProtKB/Swiss-Prot;Acc:Q9M7Z1]

Coordinates

chr1:-:74528375..74534701

Molecular Weight (calculated)

55029.4 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.081

Length

505 amino acids

Sequence
(BLAST)

001: MICRKIYQGK LPNSVLRQTI FRWFQSSVET PVTPVTSTVS SGKRIQSQLH FLRIYTPPFC SYTKSNASFT LRGCGFSTQA ALDIPVDGII DIPLAQTGEG
101: IAECELIKWF VQEGDQVEEF QPLCEVQSDK ATIEITSRYK GKISQILHVP GSIVKVGETL LKIGVDEILD PTETSDASEK MISLESDFSG TSDISSVPAE
201: TKMGGVLSTP AVRNLAKQYS LDINDVPATG KGGRILKEDV INYAMQKGLI NGAPACEQQN LSEVSPPIGG GYEDKTLQLR GYQRAMVKSM TLAAKIPHFH
301: YVEEINCDAL VELKTSFKNE TSDPEIKHTF LPVLIKSLSM ALTTHPMLNS RFSEESYEVI LKGSHNIGIA MATPNGLVVP NIKNVQSLSI LEITKELSRL
401: LNCAKINKLS SDDVSGGTIT LSNIGGIGGK FGSPLVNSPE VAIIAMGRIQ KIPHFAEDGN VCPASVMTIN IGADHRVLDG ATVARFCNDW KKFVEKPDLL
501: LLHTR

Best Arabidopsis Sequence Match ( AT3G06850.2 )
(BLAST)

001: MIARRIWRSH RFLRPFSSSS VCSPPFRVPE YLSQSSSSPA SRPFFVHPPT LMKWGGGSRS WFSNEAMATD SNSGLIDVPL AQTGEGIAEC ELLKWFVKEG
101: DSVEEFQPLC EVQSDKATIE ITSRFKGKVA LISHSPGDII KVGETLVRLA VEDSQDSLLT TDSSEIVTLG GSKQGTENLL GALSTPAVRN LAKDLGIDIN
201: VITGTGKDGR VLKEDVLRFS DQKGFVTDSV SSEHAVIGGD SVSTKASSNF EDKTVPLRGF SRAMVKTMTM ATSVPHFHFV EEINCDSLVE LKQFFKENNT
301: DSTIKHTFLP TLIKSLSMAL TKYPFVNSCF NAESLEIILK GSHNIGVAMA TEHGLVVPNI KNVQSLSLLE ITKELSRLQH LAANNKLNPE DVTGGTITLS
401: NIGAIGGKFG SPLLNLPEVA IIALGRIEKV PKFSKEGTVY PASIMMVNIA ADHRVLDGAT VARFCCQWKE YVEKPELLML QMR

Arabidopsis Description

BCE2Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M7Z1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.