Factsheet for PGSC0003DMT400029466

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g066520.2.1	Tomato	plastid	95.84	95.84
VIT_05s0077g02080.t01	Wine grape	cytosol	57.43	62.63
KRH02272	Soybean	mitochondrion	58.61	57.48
KRH50815	Soybean	mitochondrion	58.22	57.09
AT3G06850.1	Thale cress	mitochondrion, plastid	54.46	56.94
CDX74077	Canola	mitochondrion, plastid	53.86	56.9
CDY08029	Canola	mitochondrion	53.86	56.08
HORVU2Hr1G012440.1	Barley	cytosol	48.71	55.78
EES02874	Sorghum	mitochondrion	55.84	53.92
Zm00001d040670_P004	Maize	mitochondrion	55.64	53.73
Bra001220.1-P	Field mustard	mitochondrion	52.48	53.64
TraesCS2D01G073400.1	Wheat	mitochondrion	52.87	52.56
TraesCS2A01G074700.1	Wheat	nucleus	52.48	51.86
GSMUA_Achr10P...	Banana	mitochondrion	53.07	50.47
PGSC0003DMT400033754	Potato	plastid	21.58	23.7
PGSC0003DMT400023831	Potato	plastid	21.39	23.28
PGSC0003DMT400048225	Potato	mitochondrion	24.36	22.28
PGSC0003DMT400071652	Potato	mitochondrion	19.41	20.81
PGSC0003DMT400057449	Potato	mitochondrion	18.61	20.09

Protein Annotations

KEGG:00280+2.3.1.168	KEGG:00640+2.3.1.168	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10
Gene3D:4.10.320.10	MapMan:4.2.7.2.2	InterPro:BCKADH_E2	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152
GO:GO:0008270	GO:GO:0009605	GO:GO:0009628	GO:GO:0009646	GO:GO:0009744	GO:GO:0009987
GO:GO:0009991	GO:GO:0016407	GO:GO:0016740	GO:GO:0016746	GO:GO:0043617	InterPro:IPR000089
InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	UniProt:M1ASV3	PFAM:PF00198	PFAM:PF00364
PFAM:PF02817	EnsemblPlantsGene:PGSC0003DMG400011330	PGSC:PGSC0003DMG400011330	EnsemblPlants:PGSC0003DMT400029466	ScanProsite:PS00189	PFscan:PS50968
PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR43178	PANTHER:PTHR43178:SF5	SUPFAM:SSF47005	SUPFAM:SSF51230
SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI0002949C51	SEG:seg	:	:

Description

Branched-chain alpha-keto acid dehydrogenase E2 subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400011330]

Coordinates

chr1:-:57433648..57440263

Molecular Weight (calculated)

55271.7 Da

IEP (calculated)

6.597

GRAVY (calculated)

-0.097

Length

505 amino acids

Sequence
(BLAST)

001: MICRKIYQGK LRNSALRQTI FRWFQSSVET PVTPVTSTVC SGKRIQSQLH FLRNYTTPFC SYTKSNASFT LRGCGFSTQA ALDIPVGGII DIPLAQTGEG
101: IAECELIKWF VQEGDQVEEF QPLCEVQSDK ATIEITSRYK GKISQILHVP GSIVKVGETL LKIGVDEILD PTETYDASEK MTSVESDFSD TSDISSVPEE
201: TKMGGVLSTP AVRNLVKQYG LDINDVPATG KDGRILKEDV INYAMQKGLI NGAPACAQQK LSEVSPLIGG GYEDKTLQLR GYQRAMVKSM TLAARIPHFY
301: YVEEINCDAL VDLKTSFKNE TSDPEIKHTF LPVLIKSLSM ALTTHPMLNS RFSEESYEVI LKGSHNIGIA MATPNGLVVP NIKNVQSLSI LEITKELSRL
401: LNCAKINKLS SDDISGGTIT LSNIGGIGGK FGSPLVNSPE VAIIAMGRIQ KIPHFAEDGN VCPASVMTIN IGADHRVLDG ATVARFCNDW KKFVEKPDLL
501: LLHTR

Best Arabidopsis Sequence Match ( AT3G06850.2 )
(BLAST)

001: MIARRIWRSH RFLRPFSSSS VCSPPFRVPE YLSQSSSSPA SRPFFVHPPT LMKWGGGSRS WFSNEAMATD SNSGLIDVPL AQTGEGIAEC ELLKWFVKEG
101: DSVEEFQPLC EVQSDKATIE ITSRFKGKVA LISHSPGDII KVGETLVRLA VEDSQDSLLT TDSSEIVTLG GSKQGTENLL GALSTPAVRN LAKDLGIDIN
201: VITGTGKDGR VLKEDVLRFS DQKGFVTDSV SSEHAVIGGD SVSTKASSNF EDKTVPLRGF SRAMVKTMTM ATSVPHFHFV EEINCDSLVE LKQFFKENNT
301: DSTIKHTFLP TLIKSLSMAL TKYPFVNSCF NAESLEIILK GSHNIGVAMA TEHGLVVPNI KNVQSLSLLE ITKELSRLQH LAANNKLNPE DVTGGTITLS
401: NIGAIGGKFG SPLLNLPEVA IIALGRIEKV PKFSKEGTVY PASIMMVNIA ADHRVLDGAT VARFCCQWKE YVEKPELLML QMR

Arabidopsis Description

BCE2Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M7Z1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.