Factsheet for PGSC0003DMT400071652

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	PGSC0003DMT400001405	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005080.1.1	Tomato	nucleus	76.86	97.84
PGSC0003DMT400057449	Potato	mitochondrion	81.95	82.48
VIT_19s0090g00750.t01	Wine grape	cytosol	63.27	76.02
Bra035551.1-P	Field mustard	mitochondrion	68.79	74.48
VIT_10s0116g01480.t01	Wine grape	mitochondrion	73.67	73.36
GSMUA_AchrUn_...	Banana	mitochondrion	70.06	73.01
GSMUA_Achr3P18670_001	Banana	mitochondrion	69.85	72.79
AT5G55070.1	Thale cress	mitochondrion	71.55	72.63
CDY19918	Canola	mitochondrion	71.34	72.41
CDY06613	Canola	mitochondrion	71.34	72.1
CDY20790	Canola	mitochondrion	70.91	71.83
Bra002934.1-P	Field mustard	mitochondrion	70.91	71.67
CDY17300	Canola	mitochondrion	70.91	71.67
Os04t0394200-01	Rice	mitochondrion	66.67	71.36
TraesCS4D01G070200.1	Wheat	mitochondrion	66.24	71.23
TraesCS4B01G071300.1	Wheat	mitochondrion	66.24	71.23
Os02t0514700-00	Rice	mitochondrion	60.08	71.11
TraesCS4A01G243500.1	Wheat	golgi, mitochondrion, unclear	66.03	71.0
KRH14369	Soybean	nucleus	69.64	70.69
KRH73773	Soybean	mitochondrion	69.21	70.26
AT4G26910.1	Thale cress	mitochondrion	69.21	70.26
Zm00001d025258_P009	Maize	mitochondrion	66.03	69.73
TraesCS2D01G039500.2	Wheat	mitochondrion	65.39	69.21
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	65.18	68.99
TraesCS2B01G053600.1	Wheat	mitochondrion	62.42	68.85
CDY21016	Canola	mitochondrion, plastid	69.21	68.49
Bra016809.1-P	Field mustard	mitochondrion, plastid	69.0	68.42
Bra028992.1-P	Field mustard	mitochondrion	70.7	67.41
GSMUA_Achr9P01190_001	Banana	cytosol	71.13	67.4
CDY31217	Canola	mitochondrion, plastid	68.79	67.36
OQU93042	Sorghum	mitochondrion	66.24	66.81
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	66.24	65.55
Zm00001d003923_P002	Maize	mitochondrion	65.39	65.12
CDY12012	Canola	plastid	70.28	63.41
CDY36727	Canola	plastid	70.7	62.24
PGSC0003DMT400048225	Potato	mitochondrion	26.11	22.28
PGSC0003DMT400023831	Potato	plastid	19.96	20.26
PGSC0003DMT400029466	Potato	mitochondrion	20.81	19.41
PGSC0003DMT400033754	Potato	plastid	18.9	19.35
Os01t0314100-01	Rice	mitochondrion	19.32	17.4
Os01t0314000-01	Rice	cytosol	0.85	0.75

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	EntrezGene:102602931	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2
Gene3D:2.40.50.100	Gene3D:3.30.559.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004149	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746
GO:GO:0045252	InterPro:IPR000089	InterPro:IPR023213	UniProt:M1CP34	PFAM:PF00198	PFAM:PF00364
EnsemblPlantsGene:PGSC0003DMG400027873	PGSC:PGSC0003DMG400027873	EnsemblPlants:PGSC0003DMT400071652	ScanProsite:PS00189	PFscan:PS50968	PANTHER:PTHR43416
PANTHER:PTHR43416:SF5	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	InterPro:SucB	TIGRFAMs:TIGR01347
UniParc:UPI000295FC59	RefSeq:XP_006365951.1	SEG:seg	:	:	:

Description

Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400027873]

Coordinates

chr12:+:9176165..9184087

Molecular Weight (calculated)

51474.4 Da

IEP (calculated)

8.561

GRAVY (calculated)

-0.234

Length

471 amino acids

Sequence
(BLAST)

001: MLGVLRRKVA SASGLGKSMY AVRPAVSTSR ISSAATEEIL LLPRQCGHAR HFSHLVLPGC SVNLRPERES VGNLHSSLSQ QICIRPFCSN SGDLVEAVVP
101: YMGESISDGT LAKLLKNPGD KVEVDEPIAQ IETDKVTIDV TSPEAGVIQK FVAKEGDTVE PGFKVAIISK SGEGVESVDH VAPSEKPSEK EALKPTSPIQ
201: EKKEEEMKPK VETAPVKEKS KGTSPPPKRS ATEPQLPPKE RERRVPMTRL RKRVATRLKD SQNTFALLTT FNEVDMTNLM KLRSEYKDTF VEKHGVKLGL
301: MSGFVKAAVS ALQNQPIVNA VIDGDDIIYR DYVDISIAVG TPKGLVVPVL RDVDRMNFAE IEKTINELAK KATNGTISID EMAGGSFTIS NGGVYGSLLS
401: TPIINPPQSA ILGMHSIVNR PMVVGGDIVS RPMMYIALTY DHRLIDGREA VYFLRRIKDV VEDPRRLLLD V

Best Arabidopsis Sequence Match ( AT5G55070.1 )
(BLAST)

001: MMLRAVFRRA SIRGSSSASG LGKSLQSSRV AVSAQFHSVS ATETLVPRGN HAHSFHHRSC PGCPDCSRTI INGYQGTALQ RWVRPFSSDS GDVVEAVVPH
101: MGESITDGTL AAFLKKPGDR VEADEAIAQI ETDKVTIDIA SPASGVIQEF LVKEGDTVEP GNKVARISTS ADAVSHVAPS EKAPEKPAPK PSPPAEKPKV
201: ESTKVAEKPK APSPPPPPPS KQSAKEPQLP PKDRERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFLEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRDADKMN FADIEKTING LAKKATEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VQRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRI KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLQ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.