CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20790	Canola	mitochondrion	83.33	93.55
CDY06613	Canola	mitochondrion	82.95	92.92
CDY17300	Canola	mitochondrion	82.57	92.49
AT5G55070.1	Thale cress	mitochondrion	81.61	91.81
CDY19918	Canola	mitochondrion	81.42	91.59
CDY36727	Canola	plastid	90.8	88.6
Solyc12g005080.1.1	Tomato	nucleus	56.13	79.19
VIT_19s0090g00750.t01	Wine grape	cytosol	53.64	71.43
Solyc07g064800.2.1	Tomato	extracellular, nucleus	63.41	70.73
VIT_10s0116g01480.t01	Wine grape	mitochondrion	63.79	70.4
PGSC0003DMT400071652	Potato	mitochondrion	63.41	70.28
PGSC0003DMT400057449	Potato	mitochondrion	62.64	69.87
Os02t0514700-00	Rice	mitochondrion	52.87	69.35
Os04t0394200-01	Rice	mitochondrion	58.43	69.32
GSMUA_AchrUn_...	Banana	mitochondrion	59.96	69.25
TraesCS4D01G070200.1	Wheat	mitochondrion	58.05	69.18
GSMUA_Achr3P18670_001	Banana	mitochondrion	59.77	69.03
TraesCS4B01G071300.1	Wheat	mitochondrion	57.85	68.95
TraesCS4A01G243500.1	Wheat	golgi, mitochondrion, unclear	57.66	68.72
TraesCS2D01G039500.2	Wheat	mitochondrion	58.05	68.09
KRH14369	Soybean	nucleus	60.34	67.89
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	57.85	67.87
TraesCS2B01G053600.1	Wheat	mitochondrion	55.17	67.45
KRH73773	Soybean	mitochondrion	59.77	67.24
Zm00001d025258_P009	Maize	mitochondrion	57.28	67.04
CDY21016	Canola	mitochondrion, plastid	60.15	65.97
CDY31217	Canola	mitochondrion, plastid	60.73	65.9
OQU93042	Sorghum	mitochondrion	58.24	65.1
HORVU4Hr1G011850.1	Barley	mitochondrion, plastid	58.05	63.66
Zm00001d003923_P002	Maize	mitochondrion	57.47	63.42
GSMUA_Achr9P01190_001	Banana	cytosol	60.34	63.38
CDX73652	Canola	mitochondrion	11.11	31.02
CDY55206	Canola	mitochondrion	23.18	23.63
CDX97529	Canola	mitochondrion	24.9	23.13
CDX82504	Canola	plastid	23.75	23.05
CDX75740	Canola	mitochondrion, plastid	24.52	22.82
CDY33075	Canola	mitochondrion, plastid	23.95	22.52
CDY24058	Canola	mitochondrion	23.75	22.34
CDY23198	Canola	mitochondrion	7.09	20.44
CDX83563	Canola	plastid	18.39	20.17
CDY13593	Canola	plastid	18.39	20.13
CDY04184	Canola	plastid	18.39	20.04
CDY03145	Canola	plastid	17.43	19.96
CDY39183	Canola	plastid	17.82	19.7
CDY12039	Canola	plastid	16.86	19.56
CDX95323	Canola	mitochondrion	23.95	19.5
CDX74077	Canola	mitochondrion, plastid	17.62	19.25
CDY08029	Canola	mitochondrion	17.82	19.18
CDY23199	Canola	mitochondrion, plastid	23.75	18.0
Os01t0314100-01	Rice	mitochondrion	18.01	17.97
CDY34925	Canola	mitochondrion	5.94	12.06
CDY17299	Canola	cytosol, plastid	5.75	4.51
CDY69187	Canola	cytosol, nucleus	4.21	3.49
Os01t0314000-01	Rice	cytosol	0.77	0.75

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	GO:A0A078FGC2	UniProt:A0A078FGC2	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	EnsemblPlants:CDY12012
ProteinID:CDY12012	ProteinID:CDY12012.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252	EnsemblPlantsGene:GSBRNA2T00060868001
InterPro:IPR000089	InterPro:IPR023213	PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189	PFscan:PS50968
PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	MetaCyc:PWY-5084	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif
InterPro:SucB	TIGRFAMs:TIGR01347	UniPathway:UPA00868	UniParc:UPI0004EE0A26	SEG:seg	:

Description

BnaC03g14380DBnaC03g14380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGC2]

Coordinates

chrLK032015:-:864970..868515

Molecular Weight (calculated)

56712.1 Da

IEP (calculated)

10.111

GRAVY (calculated)

-0.243

Length

522 amino acids

Sequence
(BLAST)

001: MEFSNSTFQA FKSCEVAIFS RPAQKLRKVI RFSPTHLSFD SANPNFRISS LSRLRFGTMM LRAVIRRASS SASSGLGKSL QSSRVAASAQ SFHSVSSTQT
101: LALPLPRGTH SRSFHHHRSC PGCPDCSRTV SSSFRGTTLQ RWVRPFSSDT GDVVEAVVPH MGESITDGTL ASFLKKPGDR VEADEAIAQI ETDKVTIDIA
201: SPASGVIQEF LVKEGDTVEP GNKVAIISTS ADAVSHVAPS EKTAEKPAAK PSPPAEEPKV ESSKVAEKPK APSPPPPTKQ SAKEPQLPPK DRERRVPMTR
301: LRKRVATRLK DSQNTFALLT TFNEVDMTNL MKLRSQYKDA FFEKHGVKLG LMSGFIKAAV SALQHQPVAN AVIDGDDIIY RDYVDISIAV GTSKGLVVPV
401: IRGADKMNFA DIEKTINSLA KKANEGTISI DEMAGGSFTV SNGGVYGSLI STPIINPPQS AILGMHSIVQ RPMVVGGSVV PRPMMYVALT YDHRLIDGRE
501: AVYFLRRIKD VVEDPQRLLL DI

Best Arabidopsis Sequence Match ( AT5G55070.1 )
(BLAST)

001: MMLRAVFRRA SIRGSSSASG LGKSLQSSRV AVSAQFHSVS ATETLVPRGN HAHSFHHRSC PGCPDCSRTI INGYQGTALQ RWVRPFSSDS GDVVEAVVPH
101: MGESITDGTL AAFLKKPGDR VEADEAIAQI ETDKVTIDIA SPASGVIQEF LVKEGDTVEP GNKVARISTS ADAVSHVAPS EKAPEKPAPK PSPPAEKPKV
201: ESTKVAEKPK APSPPPPPPS KQSAKEPQLP PKDRERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFLEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRDADKMN FADIEKTING LAKKATEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VQRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRI KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLQ4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.