Factsheet for Os01t0314100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
mitochondrion: 23027867

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0708400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	Os02t0708400-01	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0499900-01	Rice	mitochondrion	21.61	23.35
Os02t0105200-01	Rice	mitochondrion	24.09	22.99
Os07t0410100-01	Rice	mitochondrion	23.71	22.92
Os12t0182200-01	Rice	plastid	19.89	22.27
Os08t0431300-01	Rice	plastid	19.89	21.89
Os06t0105400-02	Rice	mitochondrion	22.37	21.27
VIT_19s0090g00750.t01	Wine grape	cytosol	15.87	21.17
Os09t0408600-01	Rice	plastid	20.27	21.16
Os02t0514700-00	Rice	mitochondrion	15.87	20.85
PGSC0003DMT400057449	Potato	mitochondrion	18.36	20.51
Solyc07g064800.2.1	Tomato	extracellular, nucleus	18.36	20.51
CDY19918	Canola	mitochondrion	18.16	20.47
AT4G26910.1	Thale cress	mitochondrion	18.16	20.47
Os04t0394200-01	Rice	mitochondrion	17.21	20.45
Solyc12g005080.1.1	Tomato	nucleus	14.34	20.27
Bra035551.1-P	Field mustard	mitochondrion	16.83	20.23
KRH73773	Soybean	mitochondrion	17.78	20.04
AT5G55070.1	Thale cress	mitochondrion	17.78	20.04
CDY20790	Canola	mitochondrion	17.78	20.0
CDY17300	Canola	mitochondrion	17.78	19.96
CDY06613	Canola	mitochondrion	17.78	19.96
Bra002934.1-P	Field mustard	mitochondrion	17.78	19.96
KRH14369	Soybean	nucleus	17.59	19.83
Bra016809.1-P	Field mustard	mitochondrion, plastid	17.97	19.79
CDY21016	Canola	mitochondrion, plastid	17.78	19.54
PGSC0003DMT400071652	Potato	mitochondrion	17.4	19.32
CDY31217	Canola	mitochondrion, plastid	17.59	19.13
Bra028992.1-P	Field mustard	mitochondrion	17.97	19.03
VIT_10s0116g01480.t01	Wine grape	mitochondrion	17.21	19.03
CDY12012	Canola	plastid	17.97	18.01
CDY36727	Canola	plastid	17.97	17.57
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	2.68	13.86
Os01t0314000-01	Rice	cytosol	1.34	1.32

Protein Annotations

KEGG:00280+2.3.1.168	KEGG:00640+2.3.1.168	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10
Gene3D:4.10.320.10	MapMan:4.2.7.2.2	EntrezGene:4327289	ProteinID:BAD45472.1	ProteinID:BAF04784.1	ProteinID:BAS71801.1
InterPro:BCKADH_E2	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	ProteinID:EEE54427.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006950	GO:GO:0007154	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009605	GO:GO:0009628	GO:GO:0009646	GO:GO:0009744	GO:GO:0009987	GO:GO:0009991
GO:GO:0016407	GO:GO:0016740	GO:GO:0016746	GO:GO:0043617	InterPro:IPR000089	InterPro:IPR004167
InterPro:IPR023213	InterPro:IPR036625	EnsemblPlantsGene:Os01g0314100	EnsemblPlants:Os01t0314100-01	PFAM:PF00198	PFAM:PF00364
PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR43178
PANTHER:PTHR43178:SF5	UniProt:Q655Q2	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif
UniParc:UPI000043A2D8	RefSeq:XP_015612452.1	SEG:seg	:	:	:

Description

Catalytic domain of components of various dehydrogenase complexes containing protein. (Os01t0314100-01)

Coordinates

chr1:-:11804161..11809029

Molecular Weight (calculated)

56679.9 Da

IEP (calculated)

7.093

GRAVY (calculated)

-0.179

Length

523 amino acids

Sequence
(BLAST)

001: MACVLRLASR SRSRSGLRPT LAAPRPSPVP PPPPRVGPTP VAPSPAPLRG LLLPLSPLRL ASPDAFSSSS PSPAWLLDGL NWRRAGIGRR WFATEASAAS
101: TAAELVDVPL AQTGEGIAEC ELLRWFVTEG DQVDEFQRLC EVQSDKATIE ITSRFKGKVH QIHFGPGDIV KVGETLLKMM VGDSQTVSHD SIASSTDHSH
201: AVDAANPSGE GSVPSGTLST PAVRHLAKQY GLNISDIQGT GKDGRVLKED VLSYAASKGL CKEPTSALEE NIDQVELLEG RGSLPDANSY EDRRISLRGY
301: QRSMVKSMTL AAKVPHFHYL EEINCDALVE LKASFQNANK DHTIKHTFLP FLIKSLSKAL SKYPLLNSCF VEETNEVIFK GSHNIGVAMA TEHGLVVPNI
401: KNVQSLSILE ITKELSRLHE MASHNRLSTE DIAGGTITLS NIGAIGGKFG SPLLNLPEVA IIALGRIQKL PRFDDDENVY PSSIINVTVG ADHRVVDGAT
501: VARFCNEWKS LVEKPERLLL HMR

Best Arabidopsis Sequence Match ( AT3G06850.2 )
(BLAST)

001: MIARRIWRSH RFLRPFSSSS VCSPPFRVPE YLSQSSSSPA SRPFFVHPPT LMKWGGGSRS WFSNEAMATD SNSGLIDVPL AQTGEGIAEC ELLKWFVKEG
101: DSVEEFQPLC EVQSDKATIE ITSRFKGKVA LISHSPGDII KVGETLVRLA VEDSQDSLLT TDSSEIVTLG GSKQGTENLL GALSTPAVRN LAKDLGIDIN
201: VITGTGKDGR VLKEDVLRFS DQKGFVTDSV SSEHAVIGGD SVSTKASSNF EDKTVPLRGF SRAMVKTMTM ATSVPHFHFV EEINCDSLVE LKQFFKENNT
301: DSTIKHTFLP TLIKSLSMAL TKYPFVNSCF NAESLEIILK GSHNIGVAMA TEHGLVVPNI KNVQSLSLLE ITKELSRLQH LAANNKLNPE DVTGGTITLS
401: NIGAIGGKFG SPLLNLPEVA IIALGRIEKV PKFSKEGTVY PASIMMVNIA ADHRVLDGAT VARFCCQWKE YVEKPELLML QMR

Arabidopsis Description

BCE2Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M7Z1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.