Factsheet for GSMUA_Achr3P18670_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P09630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT4G26910.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion	87.17	87.17
Solyc12g005080.1.1	Tomato	nucleus	64.82	79.19
GSMUA_Achr9P01190_001	Banana	cytosol	81.64	74.25
VIT_19s0090g00750.t01	Wine grape	cytosol	64.38	74.23
VIT_10s0116g01480.t01	Wine grape	mitochondrion	74.11	70.82
Solyc07g064800.2.1	Tomato	extracellular, nucleus	73.23	70.73
PGSC0003DMT400057449	Potato	mitochondrion	72.57	70.09
PGSC0003DMT400071652	Potato	mitochondrion	72.79	69.85
Bra035551.1-P	Field mustard	mitochondrion	67.04	69.66
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	15.49	69.31
Bra002934.1-P	Field mustard	mitochondrion	69.69	67.6
CDY17300	Canola	mitochondrion	69.69	67.6
CDY19918	Canola	mitochondrion	69.25	67.46
KRH73773	Soybean	mitochondrion	69.03	67.24
AT4G26910.1	Thale cress	mitochondrion	69.03	67.24
CDY06613	Canola	mitochondrion	69.25	67.17
CDY20790	Canola	mitochondrion	69.03	67.1
AT5G55070.1	Thale cress	mitochondrion	68.81	67.03
KRH14369	Soybean	nucleus	68.81	67.03
CDY21016	Canola	mitochondrion, plastid	66.59	63.24
CDY31217	Canola	mitochondrion, plastid	67.26	63.2
Bra016809.1-P	Field mustard	mitochondrion, plastid	66.37	63.16
Bra028992.1-P	Field mustard	mitochondrion	68.58	62.75
CDY12012	Canola	plastid	69.03	59.77
CDY36727	Canola	plastid	68.81	58.13
GSMUA_Achr9P08540_001	Banana	cytosol	11.95	22.59
GSMUA_AchrUn_...	Banana	mitochondrion	24.34	22.22
GSMUA_Achr3P07350_001	Banana	cytosol	19.03	21.13
GSMUA_Achr9P08550_001	Banana	plastid	6.42	20.71
GSMUA_Achr3P17420_001	Banana	cytosol	10.84	19.68
GSMUA_Achr10P...	Banana	mitochondrion, vacuole	25.89	18.43
GSMUA_Achr10P...	Banana	mitochondrion	21.24	18.08

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252
EnsemblPlantsGene:GSMUA_Achr3G18670_001	EnsemblPlants:GSMUA_Achr3P18670_001	EnsemblPlants:GSMUA_Achr3T18670_001	InterPro:IPR000089	InterPro:IPR023213	UniProt:M0SFT3
PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189	PFscan:PS50968	PANTHER:PTHR43416	PANTHER:PTHR43416:SF5
SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	InterPro:SucB	TIGRFAMs:TIGR01347	UniParc:UPI0002965CCB
SEG:seg	:	:	:	:	:

Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr3G18670_001]

Coordinates

chr3:-:20081740..20086789

Molecular Weight (calculated)

49379.9 Da

IEP (calculated)

9.678

GRAVY (calculated)

-0.210

Length

452 amino acids

Sequence
(BLAST)

001: MASALTRLLR RPAAALLVAR SCRHVKRFGH QILLPGGSVC SEPAREFVRF IPRASLYQIW SRSFSSENGD LVAAVVPYMG ESITDGTLAT FLKKPGDRVN
101: VDEPIAQVET DKVTIDVNSP ETGIIQEFIA KEGDTVTPGT KVAVISKSSS GDTHVAPSDD KVVKDAQPPS PPTQTPPPTT AVEKIDRQMP KGEIPAKEKP
201: KASSPLPAKT SPLEPQLPPK ERERRVPMPR LRKRVATRLK DSQNTFAMLT TFNEVDMTNL MKLRSEYKDA FAEKHGVKMG LMSGFVKAAV SGLQNQPIIN
301: AVIDGDDIIY RDYIDISIAV GTPKGLVVPV IRNANGLNFA EIEKEINTLA KKANNGTISI DEMAGGTFTI SNGGVYGSLL STPIINPPQS AILGMHSIVS
401: RPMVVDGNIV PRPMMYIALT YDHRLIDGRE AVFFLRRIKD VVEDPRRLLL DL

Best Arabidopsis Sequence Match ( AT4G26910.2 )
(BLAST)

001: MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL PGNSGISRSA SLVSSTLQRW VRPFSAETGD TVEAVVPHMG
101: ESITDGTLAT FLKKPGERVQ ADEAIAQIET DKVTIDIASP ASGVIQEFLV NEGDTVEPGT KVAIISKSED TASQVTPSQK IPETTDTKPS PPAEDKQKPR
201: VESAPVAEKP KAPSSPPPPK QSAKEPQLPP KERERRVPMT RLRKRVATRL KDSQNTFALL TTFNEVDMTN LMKLRSQYKD AFYEKHGVKL GLMSGFIKAA
301: VSALQHQPVV NAVIDGDDII YRDYVDISIA VGTSKGLVVP VIRGADKMNF AEIEKTINSL AKKANEGTIS IDEMAGGSFT VSNGGVYGSL ISTPIINPPQ
401: SAILGMHSIV SRPMVVGGSV VPRPMMYVAL TYDHRLIDGR EAVYFLRRVK DVVEDPQRLL LDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H107]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.