Factsheet for GSMUA_Achr3P07350_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr3P17420_001
GSMUA_Achr8P07100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	GSMUA_Achr3P17420_001	AT1G34430.1	21798944
AT3G25860.1	GSMUA_Achr11P...	AT1G79070.1	21798944
AT3G25860.1	GSMUA_Achr8P07100_001	AT1G79070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P08540_001	Banana	cytosol	45.7	77.82
Solyc05g009530.2.1	Tomato	plastid	77.89	69.06
EES15031	Sorghum	plastid	79.36	68.0
Zm00001d032224_P001	Maize	plastid	78.62	67.94
VIT_01s0011g03380.t01	Wine grape	plastid	81.33	67.83
PGSC0003DMT400033754	Potato	plastid	76.66	67.83
TraesCS5B01G489600.1	Wheat	golgi	77.89	66.74
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	77.15	66.24
TraesCS5A01G476700.1	Wheat	plastid	77.15	66.24
Os08t0431300-01	Rice	plastid	77.15	66.11
CDX83563	Canola	plastid	76.9	65.76
CDY13593	Canola	plastid	76.66	65.41
Bra025167.1-P	Field mustard	plastid	76.66	65.41
HORVU5Hr1G061140.1	Barley	plastid	73.96	65.01
AT3G25860.1	Thale cress	plastid	76.66	65.0
KRH75381	Soybean	plastid	68.06	64.87
OQU89472	Sorghum	plastid	72.97	64.71
CDY39183	Canola	plastid	74.94	64.62
Bra017345.1-P	Field mustard	plastid	75.92	64.51
CDY04184	Canola	plastid	75.68	64.3
TraesCS5D01G212800.1	Wheat	plastid	72.97	64.15
Zm00001d020426_P001	Maize	plastid	71.5	64.1
TraesCS5B01G204800.1	Wheat	plastid	72.73	63.93
TraesCS3B01G372900.1	Wheat	plastid	71.25	63.88
KRG90801	Soybean	endoplasmic reticulum, nucleus	77.89	62.65
Zm00001d050383_P001	Maize	plastid	77.89	60.73
Os09t0408600-01	Rice	plastid	73.22	59.48
TraesCS5A01G206600.2	Wheat	plastid	65.85	57.76
HORVU5Hr1G112850.3	Barley	plastid	74.2	56.34
GSMUA_Achr3P17420_001	Banana	cytosol	34.15	55.82
GSMUA_Achr9P08550_001	Banana	plastid	17.94	52.14
GSMUA_AchrUn_...	Banana	mitochondrion	29.48	24.24
GSMUA_Achr10P...	Banana	mitochondrion, vacuole	32.43	20.79
GSMUA_AchrUn_...	Banana	mitochondrion	21.13	19.03
GSMUA_Achr3P18670_001	Banana	mitochondrion	21.13	19.03
GSMUA_Achr10P...	Banana	mitochondrion	24.57	18.83
GSMUA_Achr9P01190_001	Banana	cytosol	21.13	17.3
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	2.95	11.88

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004742
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009941	GO:GO:0016020	GO:GO:0016740	GO:GO:0016746	GO:GO:0022626
EnsemblPlantsGene:GSMUA_Achr3G07350_001	EnsemblPlants:GSMUA_Achr3P07350_001	EnsemblPlants:GSMUA_Achr3T07350_001	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213
InterPro:IPR036625	UniProt:M0SCK2	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189
PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF67	SUPFAM:SSF47005
SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI00029480B6	SEG:seg	:

Description

Putative Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [Source:GMGC_GENE;Acc:GSMUA_Achr3G07350_001]

Coordinates

chr3:+:5040683..5044356

Molecular Weight (calculated)

42379.0 Da

IEP (calculated)

5.474

GRAVY (calculated)

0.090

Length

407 amino acids

Sequence
(BLAST)

001: MPALSSTMTE GKIVSWVKSE GDRLSKGESV VVVESDKADM DVETFYDGIL AAIVVPAGES APVGAPIGLL AETEDEVPLA KAQAQSQSQS QPAPVTQSPP
101: SPPSIVATPF AKKLAKQHKV DIGTVVGTGP YGRITPSDIE AAVGIQPKVP VSSPSPAVTP VPQSPAPSAD TSAKAPAAAL PPIPGSTVVP FTTMQAAVSK
201: NMVESLSVPT FRVGYPVTTN ALDALYEKVK PKGVTMTVLL AKAAAMALAK HPVVNASCKD GKSFTYNESI NIAVAVAIDG GLITPVLQDA DKLDIYLLSQ
301: RWKDLLKKSR AKQLQPNEYS SGTFTVSNLG MFGVDRFDAI LPPGQGAIMA VGASKPTVVA DADGFFSVKS KMLVNVTADH RIIYGADLAA FLQTFAKIVE
401: DPESLTL

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.