CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG24345
KXG31546
OQU78843

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	OQU78843	AT1G34430.1	21798944
AT3G25860.1	KXG24345	AT1G79070.1	21798944
AT3G25860.1	KXG31546	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020426_P001	Maize	plastid	93.25	94.27
HORVU5Hr1G061140.1	Barley	plastid	81.26	80.56
TraesCS5D01G212800.1	Wheat	plastid	80.83	80.13
TraesCS5B01G204800.1	Wheat	plastid	80.61	79.91
TraesCS3B01G372900.1	Wheat	plastid	78.87	79.74
Os09t0408600-01	Rice	plastid	81.7	74.85
TraesCS5A01G206600.2	Wheat	plastid	73.86	73.06
GSMUA_Achr3P07350_001	Banana	cytosol	64.71	72.97
EES15031	Sorghum	plastid	73.64	71.16
Solyc05g009530.2.1	Tomato	plastid	64.71	64.71
VIT_01s0011g03380.t01	Wine grape	plastid	67.76	63.73
OQU78843	Sorghum	plastid	63.18	63.32
CDX83563	Canola	plastid	65.36	63.03
CDY13593	Canola	plastid	65.36	62.89
Bra025167.1-P	Field mustard	plastid	65.36	62.89
PGSC0003DMT400033754	Potato	plastid	62.96	62.83
KRH75381	Soybean	plastid	58.39	62.76
CDY39183	Canola	plastid	64.49	62.71
Bra017345.1-P	Field mustard	plastid	65.36	62.63
CDY04184	Canola	plastid	65.14	62.42
AT3G25860.1	Thale cress	plastid	65.14	62.29
KRG90801	Soybean	endoplasmic reticulum, nucleus	66.67	60.47
KXG37311	Sorghum	mitochondrion	26.58	25.21
EES04754	Sorghum	mitochondrion	29.41	25.05
EES02874	Sorghum	mitochondrion	23.75	20.84
OQU93042	Sorghum	mitochondrion	20.48	20.13

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
EntrezGene:8055804	UniProt:A0A1W0W529	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	ncoils:Coil	InterPro:E3-bd_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746
InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	EnsemblPlants:OQU89472	ProteinID:OQU89472
ProteinID:OQU89472.1	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968
PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF67	EnsemblPlantsGene:SORBI_3002G197500	SUPFAM:SSF47005
SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI0001A83F67	RefSeq:XP_002462360.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:58674144..58678481

Molecular Weight (calculated)

47857.2 Da

IEP (calculated)

9.681

GRAVY (calculated)

0.116

Length

459 amino acids

Sequence
(BLAST)

001: MASLISPYLS VPTAPGHARL AAPAAPRRRR MAVVRAKIRE IFMPALSSTM TEGKIVSWTA AEGDRVAKGD PVVVVESDKA DMDVETFHDG IVAVVLVPAG
101: ETAPVGAPIA LLAESEEEVA LARARAQALS QGQSQEPSPP HAAAAPVSGT PPPAPVAAPV TKGIATPYAK KVAKQHRVDI AGVVGTGPHG RVTAADVEAA
201: AGIKHKRKVA PPPPPPPAAV GPAPPMPASA VLPPVPGGTV VPFTTMQAAV SRNMVDSLSV PTFRVGYSMI TDKLDALYEK VKSKGVTKTV LLVKAAAVAL
301: TQHPVVNASC RDGKSFSYNN SVNIGVAVAL EGGLLTPVLE DADKLDIYLL AQKWRVLLKK ARMKQLQPNE YNSGTFTLSN LGMFGVDKFD AILPAGQGAI
401: MAVGASRPTV VADKDGFFSI KSEMLVNVTA DHRIIYGADL AAFLQTFAKI VEDPESLTL

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.