Factsheet for Zm00001d020426_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 27341663

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d023606_P005
Zm00001d039354_P001
Zm00001d041839_P001
Zm00001d049623_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT3G25860.1	Zm00001d041839_P001	AT1G34430.1	21798944
AT3G25860.1	Zm00001d049623_P002	AT1G79070.1	21798944
AT3G25860.1	Zm00001d039354_P001	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89472	Sorghum	plastid	94.27	93.25
HORVU5Hr1G061140.1	Barley	plastid	80.18	78.62
TraesCS5D01G212800.1	Wheat	plastid	79.96	78.4
TraesCS5B01G204800.1	Wheat	plastid	79.74	78.19
TraesCS3B01G372900.1	Wheat	plastid	77.97	77.97
Os09t0408600-01	Rice	plastid	79.96	72.46
TraesCS5A01G206600.2	Wheat	plastid	73.35	71.77
Zm00001d032224_P001	Maize	plastid	74.45	71.76
GSMUA_Achr3P07350_001	Banana	cytosol	64.1	71.5
Zm00001d050383_P001	Maize	plastid	73.35	63.79
Solyc05g009530.2.1	Tomato	plastid	64.32	63.62
Zm00001d023606_P005	Maize	plastid	63.22	62.8
VIT_01s0011g03380.t01	Wine grape	plastid	67.4	62.7
KRH75381	Soybean	plastid	58.81	62.53
CDY13593	Canola	plastid	65.2	62.05
PGSC0003DMT400033754	Potato	plastid	62.78	61.96
CDX83563	Canola	plastid	64.76	61.76
Bra025167.1-P	Field mustard	plastid	64.76	61.64
CDY39183	Canola	plastid	63.88	61.44
Bra017345.1-P	Field mustard	plastid	64.54	61.17
CDY04184	Canola	plastid	64.54	61.17
AT3G25860.1	Thale cress	plastid	64.32	60.83
KRG90801	Soybean	endoplasmic reticulum, nucleus	65.64	58.89
Zm00001d041839_P001	Maize	plastid	61.89	47.39
Zm00001d034531_P001	Maize	mitochondrion	27.53	25.36
Zm00001d053580_P002	Maize	mitochondrion	29.52	24.32
Zm00001d016365_P002	Maize	mitochondrion	29.74	21.88
Zm00001d040670_P004	Maize	mitochondrion	24.45	21.22
Zm00001d025258_P009	Maize	mitochondrion	20.7	21.08
Zm00001d003923_P002	Maize	mitochondrion	20.26	19.45

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
UniProt:A0A1D6I451	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	ncoils:Coil	InterPro:E3-bd_dom_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089
InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	ProteinID:ONM54918.1	PFAM:PF00198	PFAM:PF00364
PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151
PANTHER:PTHR23151:SF67	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI000220F81F
EnsemblPlantsGene:Zm00001d020426	EnsemblPlants:Zm00001d020426_P001	EnsemblPlants:Zm00001d020426_T001	SEG:seg	:	:

Description

Dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex

Coordinates

chr7:-:113230396..113233416

Molecular Weight (calculated)

47444.9 Da

IEP (calculated)

9.729

GRAVY (calculated)

0.119

Length

454 amino acids

Sequence
(BLAST)

001: MASLIPPCLS VPTAPGRARL AAPGAPRRRR MAVVRAKIRE IFMPALSSTM MEGKIVSWTA AEGDRVGKGD PVVVVESDKA DMDVETFHDG IVAVVLVPAG
101: GTAPVGAPIA LLAESEEEVA LARARAQALS QGQSQAPSPP HAAAALGPPP PAPVAPPATK GIATPYAKKL AKQHRVDIAG VVGTGPHGRV TAADVEAAAG
201: IKHKRPPPPP PPASVDAAPL VPASAVLPPV PGGTVVPFTT MQAAVSKNMV ESLRVPTFRV SYSMITDKLD ALYEKVKSKG VTKTVLLVKA AAVALTQHPV
301: VNASCRDGKS FSYNNDVNIG VAVALEGGLL TPVLEDADKM DIYLLARKWR VLLKKARMKQ LQPNEYNSGT FTLSNLGMFG VDKFDAILPA GQGAIMAVGA
401: SRPTVVADKD GFFSIKSEML VNVTADHRII YGADLAAFLQ TFAKIVEDPE CLTL

Best Arabidopsis Sequence Match ( AT1G34430.1 )
(BLAST)

001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Arabidopsis Description

EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.