Factsheet for TraesCS2B01G053600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26910.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT4G26910.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT4G26910.1	TraesCS6D01G254800.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G039500.2	Wheat	mitochondrion	99.06	95.06
TraesCS2A01G041100.1	Wheat	golgi, nucleus, unclear	98.83	94.83
Os04t0394200-01	Rice	mitochondrion	89.7	87.05
Zm00001d025258_P009	Maize	mitochondrion	87.82	84.08
TraesCS4B01G071300.1	Wheat	mitochondrion	82.9	80.82
Zm00001d003923_P002	Maize	mitochondrion	88.29	79.7
OQU93042	Sorghum	mitochondrion	86.65	79.23
Solyc12g005080.1.1	Tomato	nucleus	63.0	72.7
VIT_19s0090g00750.t01	Wine grape	cytosol	59.25	64.54
Bra035551.1-P	Field mustard	mitochondrion	65.34	64.14
AT5G55070.1	Thale cress	mitochondrion	68.15	62.72
CDY17300	Canola	mitochondrion	68.38	62.66
Bra002934.1-P	Field mustard	mitochondrion	68.38	62.66
PGSC0003DMT400071652	Potato	mitochondrion	68.85	62.42
KRH14369	Soybean	nucleus	67.68	62.28
CDY19918	Canola	mitochondrion	67.68	62.28
Solyc07g064800.2.1	Tomato	extracellular, nucleus	68.15	62.18
KRH73773	Soybean	mitochondrion	67.45	62.07
CDY06613	Canola	mitochondrion	67.68	62.02
CDY20790	Canola	mitochondrion	67.21	61.72
PGSC0003DMT400057449	Potato	mitochondrion	67.45	61.54
VIT_10s0116g01480.t01	Wine grape	mitochondrion	67.92	61.31
AT4G26910.1	Thale cress	mitochondrion	64.87	59.7
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, plastid	13.82	58.42
Bra028992.1-P	Field mustard	mitochondrion	66.74	57.69
CDY21016	Canola	mitochondrion, plastid	62.53	56.09
Bra016809.1-P	Field mustard	mitochondrion, plastid	62.3	56.0
CDY31217	Canola	mitochondrion, plastid	63.0	55.93
CDY12012	Canola	plastid	67.45	55.17
CDY36727	Canola	plastid	67.45	53.83
TraesCS7B01G205500.1	Wheat	mitochondrion	24.36	23.53
TraesCS5B01G489600.1	Wheat	golgi	22.48	20.21
TraesCS6B01G028600.1	Wheat	mitochondrion	24.82	19.92
TraesCS5B01G204800.1	Wheat	plastid	20.61	19.01
TraesCS5B01G116300.1	Wheat	golgi, unclear	20.37	18.95
TraesCS3B01G372900.1	Wheat	plastid	20.14	18.94

Protein Annotations

KEGG:00020+2.3.1.61	KEGG:00310+2.3.1.61	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.3.4.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004149
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0006099
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045252
InterPro:IPR000089	InterPro:IPR023213	PFAM:PF00198	PFAM:PF00364	ScanProsite:PS00189	PFscan:PS50968
PANTHER:PTHR43416	PANTHER:PTHR43416:SF5	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	InterPro:SucB
TIGRFAMs:TIGR01347	EnsemblPlantsGene:TraesCS2B01G053600	EnsemblPlants:TraesCS2B01G053600.1	TIGR:cd06849	SEG:seg	:

Description

No Description!

Coordinates

chr2B:-:26297279..26301718

Molecular Weight (calculated)

46565.8 Da

IEP (calculated)

8.342

GRAVY (calculated)

-0.304

Length

427 amino acids

Sequence
(BLAST)

001: MASRIASRLL RRSSPTLGLL RSYTHVRNYS SQLSGLIPAG PQSSKLTRRN YYFPNASPYQ LWSRSFASDS GDKFEAVVPF MGESVTDGTL ANFLKKPGDR
101: VEADEAIAQI ETDKVTIDVS SPEAGVIEKF IASEGDTVTP GTIVAIVSKS AAPAETHVAP SEEAPQKESP PAKAEEKSPK AEEKPTKVEP PKKQAPKPTP
201: SKTSPTEPQL PPKERERRVP MPRLTTFNEV DMTNLMKLRS DYKDEFVKKH GVKLGLMSCF VKAAVSGLQN QPIVNAVIDG DDIIYRDYVD VSVAVGTSKG
301: LVVPVIRDAD TMNFADIEKG INNLAKKATE GALSIDEMAG GTFTISNGGV YGSLISTPII NPPQSAILGM HSIVQRPVVV DGSILARPMM YLALTYDHRL
401: IDGREAVYFL RRIKDVVEDP RRLLLDI

Best Arabidopsis Sequence Match ( AT4G26910.1 )
(BLAST)

001: MMMRAVIRRA ASNGSSPSLF AKSLQSSRVA ASSPSLLSGS ETGAYLHRGN HAHSFHNLAL PAGNSGISRS ASLVSSTLQR WVRPFSAETG DTVEAVVPHM
101: GESITDGTLA TFLKKPGERV QADEAIAQIE TDKVTIDIAS PASGVIQEFL VNEGDTVEPG TKVAIISKSE DTASQVTPSQ KIPETTDTKP SPPAEDKQKP
201: RVESAPVAEK PKAPSSPPPP KQSAKEPQLP PKERERRVPM TRLRKRVATR LKDSQNTFAL LTTFNEVDMT NLMKLRSQYK DAFYEKHGVK LGLMSGFIKA
301: AVSALQHQPV VNAVIDGDDI IYRDYVDISI AVGTSKGLVV PVIRGADKMN FAEIEKTINS LAKKANEGTI SIDEMAGGSF TVSNGGVYGS LISTPIINPP
401: QSAILGMHSI VSRPMVVGGS VVPRPMMYVA LTYDHRLIDG REAVYFLRRV KDVVEDPQRL LLDI

Arabidopsis Description

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8H107]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.