CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, nucleus, plastid

Predictor Summary:

plastid 2
extracellular 2
nucleus 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91819
KRH11500
KRH23958
KRH34962
KRH36517
KRH39841

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	KRG91819	AT1G34430.1	21798944
AT5G55220.1	KRH34962	AT1G34430.1	21798944
AT5G55220.1	KRH11500	AT4G04020.1	21798944
AT5G55220.1	KRH36517	AT4G04020.1	21798944
AT5G55220.1	KRH23958	AT4G25200.1	21798944
AT5G55220.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19903	Canola	extracellular	22.41	18.57
KRH14319	Soybean	plastid	77.59	16.51
KRH73811	Soybean	plastid	75.86	16.24
VIT_19s0090g01210.t01	Wine grape	plastid	62.93	13.62
Solyc07g064950.2.1	Tomato	nucleus, plastid	58.62	12.9
PGSC0003DMT400057431	Potato	plastid	58.62	12.45
AT5G55220.1	Thale cress	plastid	57.76	12.25
Bra035563.1-P	Field mustard	plastid	55.17	11.74
CDY20778	Canola	plastid	55.17	11.74
CDY06597	Canola	plastid	55.17	11.68
Zm00001d023292_P001	Maize	plastid	51.72	11.36
EES16569	Sorghum	plastid	50.0	11.05
HORVU7Hr1G045680.1	Barley	plastid	50.0	11.03
TraesCS7A01G222800.1	Wheat	plastid	50.0	11.03
TraesCS7D01G224400.1	Wheat	plastid	50.0	11.03
Os06t0308000-01	Rice	plastid	50.86	10.99
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	53.45	10.88
TraesCS7B01G129300.1	Wheat	plastid	49.14	10.84
CDY17312	Canola	endoplasmic reticulum	26.72	8.09
Bra002923.1-P	Field mustard	cytosol, nucleus, plastid	1.72	3.28
Zm00001d000318_P001	Maize	peroxisome	7.76	3.17
CDY19904	Canola	plastid	2.59	1.85
Zm00001d047056_P001	Maize	plastid	3.45	1.19
Zm00001d013704_P001	Maize	plastid	0.86	0.44
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	0.86	0.38

Protein Annotations

EMBL:ACUP02007609	EnsemblPlants:KRH26213	EnsemblPlantsGene:GLYMA_12G159900	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0015031	InterPro:Trig_fac	InterPro:Trigger_fac_C	InterPro:Trigger_fact/SurA_dom_sf	PANTHER:PTHR30560
PFAM:PF05698	ProteinID:KRH26213	ProteinID:KRH26213.1	SUPFAM:SSF109998	UniParc:UPI000296867E	UniProt:K7LUU2
MapMan:18.12.3	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:28371687..28372276

Molecular Weight (calculated)

13245.9 Da

IEP (calculated)

4.861

GRAVY (calculated)

-0.351

Length

116 amino acids

Sequence
(BLAST)

001: MILLLISFSL DAPQRSRVKD LSLQKCQEVE QTAREQVTDN AILDQISKTV QVDIPQSLFE EQGRQLYGAN LLEIQAKMKL NQQQLVTLST SKAVNEFLEH
101: QKENITNLIK TECASW

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.