Factsheet for Bra028057.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000451.1-P
Bra004459.1-P
Bra006288.1-P
Bra008714.1-P
Bra021396.1-P
Bra022283.1-P
Bra023510.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34430.1	Bra000451.1-P	AT2G47400.1	21798944
AT1G34430.1	Bra004459.1-P	AT2G47400.1	21798944
AT1G34430.1	Bra021396.1-P	AT2G47400.1	21798944
AT1G34430.1	Bra022283.1-P	AT3G18140.1	21798944
AT1G34430.1	Bra006288.1-P	AT5G15190.1	21798944
AT1G34430.1	Bra008714.1-P	AT5G15190.1	21798944
AT1G34430.1	Bra023510.1-P	AT5G15190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12039	Canola	plastid	98.02	99.11
AT1G34430.1	Thale cress	plastid	84.84	83.01
KRG91819	Soybean	endoplasmic reticulum, nucleus	78.24	76.56
VIT_18s0072g01000.t01	Wine grape	plastid	80.0	76.31
KRH34962	Soybean	plastid	78.24	75.91
PGSC0003DMT400023831	Potato	plastid	73.63	72.2
Solyc11g017250.1.1	Tomato	plastid	73.63	71.58
GSMUA_Achr3P17420_001	Banana	cytosol	35.38	64.66
Bra025167.1-P	Field mustard	plastid	63.3	60.38
Bra017345.1-P	Field mustard	plastid	63.08	59.92
Bra001531.1-P	Field mustard	mitochondrion, plastid	29.89	29.18
Bra027386.1-P	Field mustard	mitochondrion	31.43	28.6
Bra037976.1-P	Field mustard	mitochondrion	31.87	26.8
Bra001220.1-P	Field mustard	mitochondrion	23.96	22.06
Bra033446.1-P	Field mustard	mitochondrion	29.01	20.59
Bra035551.1-P	Field mustard	mitochondrion	19.12	20.0
Bra002934.1-P	Field mustard	mitochondrion	19.12	18.67
Bra028992.1-P	Field mustard	mitochondrion	19.78	18.22
Bra016809.1-P	Field mustard	mitochondrion, plastid	18.68	17.89
Bra006910.1-P	Field mustard	mitochondrion	25.27	15.75
Bra040295.1-P	Field mustard	mitochondrion	8.57	15.18

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
InterPro:Biotin_lipoyl	EnsemblPlantsGene:Bra028057	EnsemblPlants:Bra028057.1	EnsemblPlants:Bra028057.1-P	InterPro:CAT-like_dom_sf	ncoils:Coil
InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0005886
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941	GO:GO:0016020
GO:GO:0016740	GO:GO:0016746	GO:GO:0019904	GO:GO:0022626	InterPro:IPR000089	InterPro:IPR004167
InterPro:IPR023213	InterPro:IPR036625	UniProt:M4EGZ2	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817
ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF61
SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI000254287E	SEG:seg

Description

AT1G34430 (E=4e-165) EMB3003 | EMB3003 (embryo defective 3003); acyltransferase/ dihydrolipoyllysine-residue acetyltransferase/ protein binding

Coordinates

chrA09:+:18919231..18921258

Molecular Weight (calculated)

47757.5 Da

IEP (calculated)

8.713

GRAVY (calculated)

0.041

Length

455 amino acids

Sequence
(BLAST)

001: MSRLLNTSFL PSSTCRTRSC SSSAPHFRGN KPRVVTVRAK IREIFMPALS STMTEGKIVS WVKSEGDKLS KGESVVVVES DKADMDVETF YDGYLAAIMV
101: EEGGVAPVGS AIALLAETEE EIADARAKAS LGGGGTSPVS QAPPVVEDTV SSVPPLKAVS SASASASAVH PASEGGKRVV ASPYAKKLAK ELKVELAALV
201: GSGPMGRIVA KDVEAAVAAA PPPPVQKEPS VELGSVVPFT TMQAAVSRNM AESLSVPTFR VGYTINTDAL DALYKKIKSK GVTMTALLAK ATALALAKHP
301: VVNSSCRDGN SFVYNSSINI AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP PGTGAIMAVG
401: ASQPTVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Best Arabidopsis Sequence Match ( AT1G34430.1 )
(BLAST)

001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Arabidopsis Description

EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.