Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89814 | Canola | nucleus | 93.51 | 91.91 |
| CDY59182 | Canola | nucleus | 79.65 | 81.78 |
| CDY53196 | Canola | nucleus | 79.65 | 81.06 |
| AT1G04550.2 | Thale cress | cytosol | 82.25 | 79.5 |
| CDY19477 | Canola | nucleus | 72.29 | 71.06 |
| CDY17158 | Canola | nucleus | 71.86 | 70.34 |
| CDX79522 | Canola | nucleus | 73.59 | 69.11 |
| CDX84693 | Canola | nucleus | 72.29 | 69.01 |
| CDY51701 | Canola | nucleus | 42.86 | 49.25 |
| PGSC0003DMT400003784 | Potato | nucleus | 53.25 | 45.39 |
| PGSC0003DMT400075427 | Potato | nucleus | 45.45 | 45.26 |
| Solyc12g096980.1.1 | Tomato | nucleus | 45.02 | 44.64 |
| Solyc09g090910.1.1 | Tomato | nucleus | 53.68 | 43.97 |
| VIT_05s0049g01970.t01 | Wine grape | nucleus | 58.87 | 42.37 |
| CDY46895 | Canola | cytosol | 12.99 | 41.67 |
| CDY38374 | Canola | nucleus | 42.86 | 41.6 |
| CDY35203 | Canola | nucleus | 42.42 | 40.33 |
| CDX87072 | Canola | cytosol | 27.27 | 36.0 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 25.54 | 33.91 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 25.11 | 33.33 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 38.53 | 32.84 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 38.1 | 32.47 |
| CDX95843 | Canola | plastid | 21.21 | 31.61 |
| CDX67874 | Canola | plastid | 23.38 | 31.21 |
| CDY71609 | Canola | nucleus, plastid | 21.21 | 31.21 |
| CDY48005 | Canola | cytosol, plastid | 23.38 | 31.03 |
| CDY27511 | Canola | cytosol, plastid | 23.38 | 31.03 |
| CDX92140 | Canola | nucleus, plastid | 21.21 | 31.01 |
| CDY19790 | Canola | cytosol | 25.97 | 30.77 |
| CDY25089 | Canola | plastid | 22.94 | 30.64 |
| CDX82361 | Canola | cytosol, plastid | 20.78 | 30.57 |
| CDY22876 | Canola | nucleus | 33.33 | 30.43 |
| CDY58757 | Canola | plastid | 22.51 | 30.23 |
| CDY33844 | Canola | nucleus | 32.9 | 30.04 |
| CDY11402 | Canola | plastid | 22.94 | 29.94 |
| CDX87863 | Canola | nucleus | 32.9 | 29.92 |
| CDY46538 | Canola | nucleus | 33.33 | 28.52 |
| CDY53439 | Canola | nucleus | 33.33 | 28.21 |
| CDX92888 | Canola | nucleus | 46.32 | 26.42 |
| CDX82399 | Canola | nucleus | 30.74 | 26.1 |
| CDY34957 | Canola | nucleus | 30.3 | 26.02 |
| CDY64626 | Canola | cytosol | 30.3 | 26.02 |
| CDY43104 | Canola | nucleus | 29.87 | 25.84 |
| CDX75884 | Canola | cytosol | 30.3 | 25.83 |
| CDY46058 | Canola | plastid | 17.32 | 23.95 |
| CDX92077 | Canola | nucleus | 29.44 | 23.86 |
| CDX75231 | Canola | nucleus | 22.94 | 22.94 |
| CDX68829 | Canola | nucleus | 22.51 | 22.81 |
| CDY13478 | Canola | nucleus | 22.51 | 21.4 |
| CDX72351 | Canola | nucleus | 22.51 | 21.05 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078G0U7 | UniProt:A0A078G0U7 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY18243 | ProteinID:CDY18243 | ProteinID:CDY18243.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00002773001 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF6 | SUPFAM:SSF54277 |
| UniParc:UPI0004EEB6BC | SEG:seg | : | : | : | : |
Description
BnaC05g02660DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078G0U7]
Coordinates
chrLK032083:+:484809..486538
Molecular Weight (calculated)
25525.4 Da
IEP (calculated)
10.048
GRAVY (calculated)
-0.783
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGGGSEFET RTSNLLPAES ELELGLGLSI GGGAWRERGR ILTAKDFPSV GSKRAADSSP NQGQGASPPR SSQIVGWPPI GSHRMNKVNN QAMKAAKEEE
101: EEEGKKKNEP KDVSVQGLGY VKVNMDGVGI GRKVEMRAHS SYENLAQTLE EMFFGMTGTT TSRKKAKPLR LLDGSSEFVL TYEDKEGDWM LVGDVPWRMF
201: ITSVKRLRIM GTSEANGLAP RHQDQKERRR Q
101: EEEGKKKNEP KDVSVQGLGY VKVNMDGVGI GRKVEMRAHS SYENLAQTLE EMFFGMTGTT TSRKKAKPLR LLDGSSEFVL TYEDKEGDWM LVGDVPWRMF
201: ITSVKRLRIM GTSEANGLAP RHQDQKERRR Q
001: MRGVSELEVG KSNLPAESEL ELGLGLSLGG GAWKERGRIL TAKDFPSVGS KRSAESSSHQ GASPPRSSQV VGWPPIGLHR MNSLVNNQAM KAARAEEGDG
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV
Arabidopsis Description
IAA12Auxin-responsive protein IAA12 [Source:UniProtKB/Swiss-Prot;Acc:Q38830]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.