Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014411.1-P | Field mustard | nucleus, plastid | 72.67 | 99.21 |
| CDX67874 | Canola | plastid | 93.02 | 92.49 |
| CDY25089 | Canola | plastid | 91.86 | 91.33 |
| AT3G62100.1 | Thale cress | plastid | 91.28 | 91.28 |
| CDY11402 | Canola | plastid | 91.86 | 89.27 |
| CDY27511 | Canola | cytosol, plastid | 78.49 | 77.59 |
| CDY48005 | Canola | cytosol, plastid | 78.49 | 77.59 |
| CDY46895 | Canola | cytosol | 21.51 | 51.39 |
| VIT_07s0005g02550.t01 | Wine grape | plastid | 50.0 | 49.14 |
| GSMUA_Achr8P29850_001 | Banana | nucleus | 45.93 | 44.89 |
| KRH33660 | Soybean | plastid | 45.35 | 44.07 |
| GSMUA_Achr9P16800_001 | Banana | nucleus | 43.6 | 43.1 |
| KRH69143 | Soybean | plastid | 44.77 | 42.78 |
| KRG96613 | Soybean | plastid | 43.6 | 42.37 |
| Os01t0286900-01 | Rice | nucleus | 27.91 | 41.74 |
| KRH68346 | Soybean | plastid | 43.6 | 41.67 |
| CDX92140 | Canola | nucleus, plastid | 36.63 | 39.87 |
| CDX82361 | Canola | cytosol, plastid | 36.05 | 39.49 |
| CDY71609 | Canola | nucleus, plastid | 36.05 | 39.49 |
| CDX95843 | Canola | plastid | 35.47 | 39.35 |
| EES00605 | Sorghum | nucleus, plastid | 41.28 | 36.79 |
| Os02t0723400-02 | Rice | nucleus | 41.28 | 34.63 |
| Zm00001d040541_P001 | Maize | nucleus, plastid | 35.47 | 33.7 |
| TraesCS1D01G084100.1 | Wheat | nucleus, plastid | 40.12 | 33.33 |
| Zm00001d008201_P001 | Maize | cytosol | 25.0 | 33.08 |
| CDY46058 | Canola | plastid | 29.65 | 30.54 |
| TraesCS1B01G100300.1 | Wheat | plastid | 40.7 | 29.54 |
| CDX87072 | Canola | cytosol | 27.91 | 27.43 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 26.74 | 26.44 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 26.74 | 26.44 |
| CDY51701 | Canola | nucleus | 30.81 | 26.37 |
| TraesCS1A01G082700.2 | Wheat | plastid | 40.12 | 26.24 |
| HORVU1Hr1G017770.6 | Barley | cytosol, mitochondrion, vacuole | 30.81 | 25.6 |
| CDY38374 | Canola | nucleus | 33.14 | 23.95 |
| CDY19790 | Canola | cytosol | 26.74 | 23.59 |
| CDY35203 | Canola | nucleus | 33.14 | 23.46 |
| CDY18243 | Canola | nucleus | 30.23 | 22.51 |
| CDY53196 | Canola | nucleus | 29.65 | 22.47 |
| CDX89814 | Canola | nucleus | 30.23 | 22.13 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 34.3 | 21.77 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 33.72 | 21.4 |
| CDY59182 | Canola | nucleus | 27.91 | 21.33 |
| CDY19477 | Canola | nucleus | 29.07 | 21.28 |
| CDY17158 | Canola | nucleus | 29.07 | 21.19 |
| CDX79522 | Canola | nucleus | 28.49 | 19.92 |
| CDX84693 | Canola | nucleus | 27.33 | 19.42 |
| CDX87863 | Canola | nucleus | 28.49 | 19.29 |
| CDX75231 | Canola | nucleus | 25.58 | 19.05 |
| CDY33844 | Canola | nucleus | 26.74 | 18.18 |
| CDY22876 | Canola | nucleus | 26.16 | 17.79 |
| CDX68829 | Canola | nucleus | 23.26 | 17.54 |
| CDY46538 | Canola | nucleus | 27.33 | 17.41 |
| CDY13478 | Canola | nucleus | 24.42 | 17.28 |
| CDY53439 | Canola | nucleus | 27.33 | 17.22 |
| CDY34957 | Canola | nucleus | 26.74 | 17.1 |
| CDX72351 | Canola | nucleus | 24.42 | 17.0 |
| CDY64626 | Canola | cytosol | 26.16 | 16.73 |
| CDX75884 | Canola | cytosol | 26.16 | 16.61 |
| CDX82399 | Canola | nucleus | 26.16 | 16.54 |
| CDY43104 | Canola | nucleus | 25.58 | 16.48 |
| CDX92077 | Canola | nucleus | 25.58 | 15.44 |
| CDX92888 | Canola | nucleus | 34.3 | 14.57 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078J0P4 | UniProt:A0A078J0P4 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY58757 | ProteinID:CDY58757 | ProteinID:CDY58757.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00025117001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF15 | SUPFAM:SSF54277 | UniParc:UPI0004EE198D |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g27430DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0P4]
Coordinates
chrLK033697:-:5322..6379
Molecular Weight (calculated)
19420.6 Da
IEP (calculated)
4.738
GRAVY (calculated)
-0.498
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRRSSPSS SIESSCKSNP FGVSSSNTRN LSTDLRLGLS FGSSSGQYYN GGENHDEYGV VAADHKMIIE EEDQNECNSL GNFYVKVNME GVPIGRKIDL
101: FSLNGYHDLI TTLDYMFNAS ILWAEEEDMC SEKSHVLTYA DKEGDWIMVG DVPWEMFLSS VRRLKISRAY HY
101: FSLNGYHDLI TTLDYMFNAS ILWAEEEDMC SEKSHVLTYA DKEGDWIMVG DVPWEMFLSS VRRLKISRAY HY
001: MGRGRSSSSS SIESSCKSNP FGVSSSNTRN LSTDLRLGLS FGSSSGQYYN GGDNHEYDGV GAAEEMMIME EEEQNECNSV GSFYVKVNME GVPIGRKIDL
101: LSLNGYHDLI TTLDYMFNAS ILWAEEEDMC SEKSHVLTYA DKEGDWMMVG DVPWEMFLSS VRRLKISRAY HY
101: LSLNGYHDLI TTLDYMFNAS ILWAEEEDMC SEKSHVLTYA DKEGDWMMVG DVPWEMFLSS VRRLKISRAY HY
Arabidopsis Description
IAA30Auxin-responsive protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.