Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59182 | Canola | nucleus | 90.75 | 91.56 |
| CDY18243 | Canola | nucleus | 81.06 | 79.65 |
| CDX89814 | Canola | nucleus | 82.38 | 79.57 |
| AT1G04550.2 | Thale cress | cytosol | 83.7 | 79.5 |
| Bra032503.1-P | Field mustard | nucleus | 96.92 | 70.97 |
| CDY19477 | Canola | nucleus | 73.13 | 70.64 |
| CDY17158 | Canola | nucleus | 72.69 | 69.92 |
| CDX84693 | Canola | nucleus | 73.57 | 69.01 |
| CDX79522 | Canola | nucleus | 73.57 | 67.89 |
| CDY51701 | Canola | nucleus | 42.73 | 48.26 |
| PGSC0003DMT400075427 | Potato | nucleus | 46.7 | 45.69 |
| Solyc12g096980.1.1 | Tomato | nucleus | 46.7 | 45.49 |
| PGSC0003DMT400003784 | Potato | nucleus | 52.86 | 44.28 |
| Solyc09g090910.1.1 | Tomato | nucleus | 54.19 | 43.62 |
| CDY38374 | Canola | nucleus | 44.05 | 42.02 |
| VIT_05s0049g01970.t01 | Wine grape | nucleus | 57.71 | 40.81 |
| CDY35203 | Canola | nucleus | 43.61 | 40.74 |
| CDY46895 | Canola | cytosol | 12.78 | 40.28 |
| CDX87072 | Canola | cytosol | 27.75 | 36.0 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 25.99 | 33.91 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 40.09 | 33.58 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 25.55 | 33.33 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 39.65 | 33.21 |
| CDY22876 | Canola | nucleus | 36.12 | 32.41 |
| CDY33844 | Canola | nucleus | 35.68 | 32.02 |
| CDX87863 | Canola | nucleus | 35.68 | 31.89 |
| CDX95843 | Canola | plastid | 21.59 | 31.61 |
| CDY25089 | Canola | plastid | 23.79 | 31.21 |
| CDY71609 | Canola | nucleus, plastid | 21.59 | 31.21 |
| CDY46538 | Canola | nucleus | 37.0 | 31.11 |
| CDX92140 | Canola | nucleus, plastid | 21.59 | 31.01 |
| CDY53439 | Canola | nucleus | 37.0 | 30.77 |
| CDX67874 | Canola | plastid | 23.35 | 30.64 |
| CDX82361 | Canola | cytosol, plastid | 21.15 | 30.57 |
| CDY19790 | Canola | cytosol | 25.99 | 30.26 |
| CDY27511 | Canola | cytosol, plastid | 22.91 | 29.89 |
| CDY48005 | Canola | cytosol, plastid | 22.91 | 29.89 |
| CDY58757 | Canola | plastid | 22.47 | 29.65 |
| CDY11402 | Canola | plastid | 22.91 | 29.38 |
| CDY34957 | Canola | nucleus | 33.48 | 28.25 |
| CDY64626 | Canola | cytosol | 33.48 | 28.25 |
| CDY43104 | Canola | nucleus | 33.04 | 28.09 |
| CDX75884 | Canola | cytosol | 33.04 | 27.68 |
| CDX82399 | Canola | nucleus | 32.6 | 27.21 |
| CDX92077 | Canola | nucleus | 32.6 | 25.96 |
| CDX92888 | Canola | nucleus | 46.26 | 25.93 |
| CDY46058 | Canola | plastid | 17.18 | 23.35 |
| CDX75231 | Canola | nucleus | 22.91 | 22.51 |
| CDX68829 | Canola | nucleus | 22.47 | 22.37 |
| CDY13478 | Canola | nucleus | 22.03 | 20.58 |
| CDX72351 | Canola | nucleus | 22.03 | 20.24 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078ITR2 | UniProt:A0A078ITR2 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY53196 | ProteinID:CDY53196 | ProteinID:CDY53196.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00008754001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF6 | SUPFAM:SSF54277 | UniParc:UPI0004EDD3D4 |
| SEG:seg | : | : | : | : | : |
Description
BnaAnng12210DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITR2]
Coordinates
chrLK033174:+:49937..51318
Molecular Weight (calculated)
24608.2 Da
IEP (calculated)
9.442
GRAVY (calculated)
-0.567
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGGSELELR KSNLPAESDL ELGLGLSLGG GAWRERGRIL TAKDFPSVGS KRAAADSSSS HHGASPPRSS QVVGWPPVGS HRMNSLANKQ AMKAEQGEGK
101: EEGKKEDEPK DVSVKVVEGS GFVKVNKDGV GIGRKVDVRA HSSYENLALT LEEMFFGRTG TASVEKVKAL RLLDGSSEFV LTYEDKEGDW MLVGDVPWRM
201: FITSVKRLRI MGTSEASGLA PRHQEQK
101: EEGKKEDEPK DVSVKVVEGS GFVKVNKDGV GIGRKVDVRA HSSYENLALT LEEMFFGRTG TASVEKVKAL RLLDGSSEFV LTYEDKEGDW MLVGDVPWRM
201: FITSVKRLRI MGTSEASGLA PRHQEQK
001: MRGVSELEVG KSNLPAESEL ELGLGLSLGG GAWKERGRIL TAKDFPSVGS KRSAESSSHQ GASPPRSSQV VGWPPIGLHR MNSLVNNQAM KAARAEEGDG
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV
101: EKKVVKNDEL KDVSMKVNPK VQGLGFVKVN MDGVGIGRKV DMRAHSSYEN LAQTLEEMFF GMTGTTCREK VKPLRLLDGS SDFVLTYEDK EGDWMLVGDV
201: PWRMFINSVK RLRIMGTSEA SGLAPRRQEQ KDRQRNNPV
Arabidopsis Description
IAA12Auxin-responsive protein IAA12 [Source:UniProtKB/Swiss-Prot;Acc:Q38830]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.