Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35203 | Canola | nucleus | 96.64 | 94.65 |
| Bra011045.1-P | Field mustard | nucleus | 93.28 | 91.36 |
| CDY51701 | Canola | nucleus | 71.85 | 85.07 |
| AT4G28640.2 | Thale cress | cytosol, nucleus, plastid | 83.19 | 65.56 |
| CDX92888 | Canola | nucleus | 78.57 | 46.17 |
| CDY19477 | Canola | nucleus | 44.12 | 44.68 |
| CDX84693 | Canola | nucleus | 45.38 | 44.63 |
| CDY17158 | Canola | nucleus | 44.12 | 44.49 |
| CDX79522 | Canola | nucleus | 45.8 | 44.31 |
| CDY53196 | Canola | nucleus | 42.02 | 44.05 |
| CDX89844 | Canola | cytosol, nucleus, plastid | 49.16 | 43.17 |
| CDY18205 | Canola | cytosol, nucleus, plastid | 49.16 | 43.17 |
| CDY18243 | Canola | nucleus | 41.6 | 42.86 |
| CDY59182 | Canola | nucleus | 39.92 | 42.22 |
| CDX89814 | Canola | nucleus | 41.18 | 41.7 |
| CDY46895 | Canola | cytosol | 12.61 | 41.67 |
| CDY71609 | Canola | nucleus, plastid | 24.37 | 36.94 |
| CDX95843 | Canola | plastid | 23.95 | 36.77 |
| CDX92140 | Canola | nucleus, plastid | 24.37 | 36.71 |
| CDX87072 | Canola | cytosol | 26.89 | 36.57 |
| CDX82361 | Canola | cytosol, plastid | 23.95 | 36.31 |
| CDY25089 | Canola | plastid | 26.05 | 35.84 |
| CDX67874 | Canola | plastid | 25.21 | 34.68 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 25.21 | 34.48 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 25.21 | 34.48 |
| CDY58757 | Canola | plastid | 23.95 | 33.14 |
| CDY11402 | Canola | plastid | 23.95 | 32.2 |
| CDY48005 | Canola | cytosol, plastid | 23.53 | 32.18 |
| CDY19790 | Canola | cytosol | 26.05 | 31.79 |
| CDY27511 | Canola | cytosol, plastid | 23.11 | 31.61 |
| CDY22876 | Canola | nucleus | 32.35 | 30.43 |
| CDY33844 | Canola | nucleus | 31.51 | 29.64 |
| CDY34957 | Canola | nucleus | 33.19 | 29.37 |
| CDX87863 | Canola | nucleus | 31.09 | 29.13 |
| CDY64626 | Canola | cytosol | 32.77 | 29.0 |
| CDY46538 | Canola | nucleus | 32.77 | 28.89 |
| CDY53439 | Canola | nucleus | 32.35 | 28.21 |
| CDY43104 | Canola | nucleus | 31.09 | 27.72 |
| CDY46058 | Canola | plastid | 19.33 | 27.54 |
| CDX75884 | Canola | cytosol | 31.09 | 27.31 |
| CDX82399 | Canola | nucleus | 31.09 | 27.21 |
| CDX92077 | Canola | nucleus | 31.51 | 26.32 |
| CDX68829 | Canola | nucleus | 22.27 | 23.25 |
| CDX75231 | Canola | nucleus | 22.27 | 22.94 |
| CDX72351 | Canola | nucleus | 21.85 | 21.05 |
| CDY13478 | Canola | nucleus | 21.43 | 20.99 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | GO:A0A078HLY8 | UniProt:A0A078HLY8 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| EnsemblPlants:CDY38374 | ProteinID:CDY38374 | ProteinID:CDY38374.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00065789001 | InterPro:IPR000270 | InterPro:PB1_dom |
| PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF48 | SUPFAM:SSF54277 | UniParc:UPI0004EF35EA |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g09830DAuxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLY8]
Coordinates
chrLK032423:-:37896..39381
Molecular Weight (calculated)
25737.3 Da
IEP (calculated)
5.774
GRAVY (calculated)
-0.486
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGSASTLS NDDNLVVSSE DSSSPTENGL ELRLTLSLGR KGYRDCRASH ANDDSSSSSS SPSSLSSRAS VTAGIKRTAD SMAATSGQVV GWPPIRTYRM
101: NSMVNQAKTL AMEDPQQVNK NITDAAQMRS SMFVKVTMDG IPIGRKIDLN AHQCYESLSN TLEDMFLKPK SVSSTQETDG HLETRLKILP DGSSGLVLTY
201: EDKEGDWMLV GDVPWRMFIG SVKRLRIMKT SEATGAGN
101: NSMVNQAKTL AMEDPQQVNK NITDAAQMRS SMFVKVTMDG IPIGRKIDLN AHQCYESLSN TLEDMFLKPK SVSSTQETDG HLETRLKILP DGSSGLVLTY
201: EDKEGDWMLV GDVPWRMFIG SVKRLRIMKT SEATGAGN
001: MEGGSASGSA SALSNDENLV VSCEDSSSPI GNELELGLTL SLGRKGYRDC RVYADDSSSS SSSSSLSRAS VIAGIKRTAD SMAATSGQVV GWPPIRTYRM
101: NSMVNQAKAS ATEDPNLEIS QAVNKNRSDS TKMRNSMFVK VTMDGIPIGR KIDLNAHKCY ESLSNTLEEM FLKPKLGSRT LETDGHMETP VKILPDGSSG
201: LVLTYEDKEG DWMLVGDVPW GMFIGSVRRL RIMKTSEATG KGTFTDSIKS
101: NSMVNQAKAS ATEDPNLEIS QAVNKNRSDS TKMRNSMFVK VTMDGIPIGR KIDLNAHKCY ESLSNTLEEM FLKPKLGSRT LETDGHMETP VKILPDGSSG
201: LVLTYEDKEG DWMLVGDVPW GMFIGSVRRL RIMKTSEATG KGTFTDSIKS
Arabidopsis Description
IAA11Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A8MR39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.