Factsheet for AT4G28640.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51701	Canola	nucleus	57.95	87.06
CDY38374	Canola	nucleus	65.56	83.19
CDY35203	Canola	nucleus	64.9	80.66
Bra011045.1-P	Field mustard	nucleus	64.24	79.84
Bra024187.1-P	Field mustard	plastid	65.56	49.75
CDX92888	Canola	nucleus	64.9	48.4
AT1G04550.2	Thale cress	cytosol	35.43	44.77
AT1G04100.1	Thale cress	cytosol	38.41	44.44
AT2G33310.2	Thale cress	nucleus	35.76	43.72
AT3G17600.1	Thale cress	nucleus, plastid	20.86	39.87
AT3G62100.1	Thale cress	plastid	19.54	34.3
AT5G25890.1	Thale cress	nucleus	19.87	34.29
AT2G46990.1	Thale cress	plastid	19.21	33.14
AT1G51950.1	Thale cress	nucleus	25.5	28.84
AT3G16500.1	Thale cress	nucleus	23.84	26.77
AT4G32280.1	Thale cress	cytosol	18.54	22.31

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	EntrezGene:828982	UniProt:A8MR39	ProteinID:AEE85516.1	ArrayExpress:AT4G28640
EnsemblPlantsGene:AT4G28640	RefSeq:AT4G28640	TAIR:AT4G28640	RefSeq:AT4G28640-TAIR-G	EnsemblPlants:AT4G28640.2	TAIR:AT4G28640.2
InterPro:AUX/IAA_dom	InterPro:AUX_IAA	Unigene:At.25401	GO:GO:0003674	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009506	GO:GO:0009719	GO:GO:0009733	GO:GO:0009734	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	Symbol:IAA11	InterPro:IPR000270	RefSeq:NP_001078460.1	InterPro:PB1_dom
PFAM:PF02309	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF48	SUPFAM:SSF54277
TMHMM:TMhelix	UniParc:UPI0001505597	SEG:seg	:	:	:

Description

IAA11Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A8MR39]

Coordinates

chr4:+:14142135..14143969

Molecular Weight (calculated)

33335.7 Da

IEP (calculated)

5.070

GRAVY (calculated)

-0.221

Length

302 amino acids

Sequence
(BLAST)

001: MEGGSASGSA SALSNDENLV VSCEDSSSPI GNELELGLTL SLGRKGYRDC RVYADDSSSS SSSSSLSRAS VIAGIKRTAD SMAATSGQVV GWPPIRTYRM
101: NSMVNQAKAS ATEDPNLEIS QAVNKNRSDS TKMRNSMFVK VTMDGIPIGR KIDLNAHKCY ESLSNTLEEM FLKPKLGSRT LETDGHMETP VKILPDGSSG
201: LVLTYEDKEG DWMLVGDVPW GMFIGSVRRL RIMKTSEATG KDDIMKQIII YEEPFMFEAV IRQITDQRED KNIVRSFFFF SPLYSFFFGS AIFLLVSYMF
301: SL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.