Factsheet for Bra024187.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
cytosol 1
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92888	Canola	nucleus	95.48	93.83
Bra011045.1-P	Field mustard	nucleus	46.98	76.95
AT4G28640.2	Thale cress	cytosol, nucleus, plastid	49.75	65.56
Bra022934.1-P	Field mustard	nucleus	27.89	45.87
Bra015326.1-P	Field mustard	nucleus	25.88	43.83
Bra005508.1-P	Field mustard	nucleus	27.39	42.91
Bra015289.1-P	Field mustard	nucleus	27.64	40.59
Bra021257.1-P	Field mustard	cytosol	7.29	40.28
Bra022224.1-P	Field mustard	nucleus, plastid	15.33	38.61
Bra001670.1-P	Field mustard	nucleus	14.07	37.84
Bra003484.1-P	Field mustard	nucleus, plastid	15.83	36.63
Bra036557.1-P	Field mustard	nucleus	15.83	36.0
Bra032503.1-P	Field mustard	nucleus	27.39	35.16
Bra009867.1-P	Field mustard	cytosol	15.33	34.66
Bra040476.1-P	Field mustard	cytosol, plastid	15.08	34.48
Bra007661.1-P	Field mustard	plastid	15.08	33.9
Bra014411.1-P	Field mustard	nucleus, plastid	10.55	33.33
Bra018938.1-P	Field mustard	nucleus	19.35	30.43
Bra014303.1-P	Field mustard	nucleus	20.1	29.63
Bra021184.1-P	Field mustard	nucleus	19.6	29.0
Bra001634.1-P	Field mustard	nucleus	18.34	26.84
Bra022164.1-P	Field mustard	nucleus	19.1	26.67
Bra011332.1-P	Field mustard	nucleus	14.07	24.24
Bra023958.1-P	Field mustard	nucleus	13.32	21.81

Protein Annotations

MapMan:1.1.1.3.9	Gene3D:2.40.30.220	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	EnsemblPlantsGene:Bra024187	EnsemblPlants:Bra024187.1
EnsemblPlants:Bra024187.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009523	GO:GO:0009579
GO:GO:0009654	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020
InterPro:IPR000270	InterPro:IPR038676	UniProt:M4E5Y3	HAMAP:MF_01370	InterPro:PB1_dom	PFAM:PD012692
PFAM:PF02309	PFAM:PF03912	PFscan:PS51745	InterPro:PSII_Psb28_class-1	PANTHER:PTHR34963	PANTHER:PTHR34963:SF2
InterPro:Psb28_c1_sf	SUPFAM:SSF54277	TIGRFAMs:TIGR03047	UniParc:UPI0002540C3B	SEG:seg	:

Description

AT4G28640 (E=2e-087) IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11); transcription factor

Coordinates

chrA03:+:27027174..27029923

Molecular Weight (calculated)

43502.9 Da

IEP (calculated)

7.596

GRAVY (calculated)

-0.339

Length

398 amino acids

Sequence
(BLAST)

001: MERGSASGSA STLSNNENVL VSCEDSSSPA ENELELGLTL SLGRERRVSY ADDSSSSSSS LSSRASVTAG IKRTADSMAA TSGQVVGWPP IRSYRMNSMV
101: NQAKTLAMED PIKNRTDATT KMRMFVKVTM DGIPIGRKID LNAHRCYESL SNTLEDMFLK PKTDGHLEAG LKILPDGSSG LVLTYEDKEG DWMLVGDVPW
201: GMFIGSVKRL RIMKTSEATG TGSLTSVTHS PRYVSRTTGI VMSSCSVHPI TPSAFTGSPI SLPRLHTPSP TTLRPRSLVP ITMMVKPSLQ FIQGTDELTI
301: PDVKLTRSRD GSNGMALFSF DQPSVFDSSG EVGEITGLYM IDEEGVIQST DVNARFVNGK PEGIVAKHVM RTPKEWDRFM RFMERYSDQN GLQFVKKQ

Best Arabidopsis Sequence Match ( AT4G28640.3 )
(BLAST)

001: MEGGSASGSA SALSNDENLV VSCEDSSSPI GNELELGLTL SLGRKGYRDC RVYADDSSSS SSSSSLSRAS VIAGIKRTAD SMAATSGQVV GWPPIRTYRM
101: NSMVNQAKAS ATEDPNLEIS QAVNKNRSDS TKMRNSMFVK VTMDGIPIGR KIDLNAHKCY ESLSNTLEEM FLKPKLGSRT LETDGHMETP VKILPDGSSG
201: LVLTYEDKEG DWMLVGDVPW GMFIGSVRRL RIMKTSEATG KGTFTDSIKS

Arabidopsis Description

IAA11Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A8MR39]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.