Factsheet for Bra014411.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001634.1-P
Bra001900.1-P
Bra009867.1-P
Bra012190.1-P
Bra016492.1-P
Bra016517.1-P
Bra017362.1-P
Bra018124.1-P
Bra021184.1-P
Bra022164.1-P
Bra025720.1-P
Bra025775.1-P
Bra027504.1-P
Bra027944.1-P
Bra033886.1-P
Bra034234.1-P
Bra035185.1-P
Bra036557.1-P
Bra039732.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62100.1	Bra016517.1-P	AT1G19220.1	21734647
AT3G62100.1	Bra025720.1-P	AT1G19220.1	21734647
AT3G62100.1	Bra012190.1-P	AT1G19850.1	21734647
AT3G62100.1	Bra016492.1-P	AT1G19850.1	21734647
AT3G62100.1	Bra025775.1-P	AT1G19850.1	21734647
AT3G62100.1	Bra017362.1-P	AT1G34310.1	21734647
AT3G62100.1	Bra018124.1-P	AT1G34310.1	21734647
AT3G62100.1	Bra027944.1-P	AT1G34310.1	21734647
AT3G62100.1	Bra034234.1-P	AT1G34310.1	21734647
AT3G62100.1	Bra035185.1-P	AT1G80390.1	21734647
AT3G62100.1	Bra040476.1-P	AT2G46990.1	21734647
AT3G62100.1	Bra001634.1-P	AT3G16500.1	21734647
AT3G62100.1	Bra021184.1-P	AT3G16500.1	21734647
AT3G62100.1	Bra022164.1-P	AT3G16500.1	21734647
AT3G62100.1	Bra001900.1-P	AT3G23050.1	21734647
AT3G62100.1	Bra033886.1-P	AT3G23050.1	21734647
AT3G62100.1	Bra039732.1-P	AT4G14560.1	21734647
AT3G62100.1	Bra009867.1-P	AT5G25890.1	21734647
AT3G62100.1	Bra036557.1-P	AT5G25890.1	21734647
AT3G62100.1	Bra027504.1-P	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58757	Canola	plastid	99.21	72.67
Bra003484.1-P	Field mustard	nucleus, plastid	90.48	66.28
AT3G62100.1	Thale cress	plastid	89.68	65.7
Bra007661.1-P	Field mustard	plastid	90.48	64.41
Bra040476.1-P	Field mustard	cytosol, plastid	74.6	54.02
Bra021257.1-P	Field mustard	cytosol	19.05	33.33
VIT_07s0005g02550.t01	Wine grape	plastid	45.24	32.57
KRH33660	Soybean	plastid	42.86	30.51
GSMUA_Achr8P29850_001	Banana	nucleus	42.06	30.11
GSMUA_Achr9P16800_001	Banana	nucleus	41.27	29.89
KRH69143	Soybean	plastid	42.06	29.44
KRG96613	Soybean	plastid	41.27	29.38
KRH68346	Soybean	plastid	41.27	28.89
Bra022224.1-P	Field mustard	nucleus, plastid	33.33	26.58
EES00605	Sorghum	nucleus, plastid	38.1	24.87
Bra001670.1-P	Field mustard	nucleus	27.78	23.65
Os01t0286900-01	Rice	nucleus	20.63	22.61
Os02t0723400-02	Rice	nucleus	36.51	22.44
TraesCS1D01G084100.1	Wheat	nucleus, plastid	35.71	21.74
Zm00001d040541_P001	Maize	nucleus, plastid	30.16	20.99
TraesCS1B01G100300.1	Wheat	plastid	35.71	18.99
TraesCS1A01G082700.2	Wheat	plastid	35.71	17.11
Zm00001d008201_P001	Maize	cytosol	17.46	16.92
Bra011045.1-P	Field mustard	nucleus	30.95	16.05
Bra036557.1-P	Field mustard	nucleus	22.22	16.0
Bra009867.1-P	Field mustard	cytosol	21.43	15.34
Bra015326.1-P	Field mustard	nucleus	26.98	14.47
Bra015289.1-P	Field mustard	nucleus	29.37	13.65
HORVU1Hr1G017770.6	Barley	cytosol, mitochondrion, vacuole	22.22	13.53
Bra005508.1-P	Field mustard	nucleus	26.19	12.99
Bra022934.1-P	Field mustard	nucleus	23.81	12.4
Bra032503.1-P	Field mustard	nucleus	27.78	11.29
Bra011332.1-P	Field mustard	nucleus	20.63	11.26
Bra014303.1-P	Field mustard	nucleus	23.81	11.11
Bra018938.1-P	Field mustard	nucleus	22.22	11.07
Bra024187.1-P	Field mustard	plastid	33.33	10.55
Bra021184.1-P	Field mustard	nucleus	22.22	10.41
Bra023958.1-P	Field mustard	nucleus	19.84	10.29
Bra001634.1-P	Field mustard	nucleus	21.43	9.93
Bra022164.1-P	Field mustard	nucleus	22.22	9.82

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra014411	EnsemblPlants:Bra014411.1
EnsemblPlants:Bra014411.1-P	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	UniProt:M4DD43	PFAM:PF02309
PANTHER:PTHR31734	PANTHER:PTHR31734:SF15	SUPFAM:SSF54277	UniParc:UPI000254382E	SEG:seg	:

Description

AT3G62100 (E=3e-021) IAA30 | IAA30 (INDOLE-3-ACETIC ACID INDUCIBLE 30); transcription factor

Coordinates

chrA04:-:376819..377708

Molecular Weight (calculated)

14270.3 Da

IEP (calculated)

4.662

GRAVY (calculated)

-0.794

Length

126 amino acids

Sequence
(BLAST)

001: MGRRRSSPSS SIESSCKSNP FGVSSSNTRN LSTDLRLGLS FGSSSGQYYN GGENHDEYGV VAADHKMIIE EEDQNEWAEE EDMCSEKSHV LTYADKEGDW
101: IMVGDVPWEM FLSSVRRLKI SRTYHY

Best Arabidopsis Sequence Match ( AT3G62100.1 )
(BLAST)

001: MGRGRSSSSS SIESSCKSNP FGVSSSNTRN LSTDLRLGLS FGSSSGQYYN GGDNHEYDGV GAAEEMMIME EEEQNECNSV GSFYVKVNME GVPIGRKIDL
101: LSLNGYHDLI TTLDYMFNAS ILWAEEEDMC SEKSHVLTYA DKEGDWMMVG DVPWEMFLSS VRRLKISRAY HY

Arabidopsis Description

IAA30Auxin-responsive protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.