Factsheet for Bra025720.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001900.1-P
Bra002729.1-P
Bra014303.1-P
Bra015289.1-P
Bra015298.1-P
Bra017362.1-P
Bra018124.1-P
Bra018938.1-P
Bra026166.1-P
Bra027944.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra034234.1-P
Bra039732.1-P
Bra040122.1-P
Bra040398.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19220.1	Bra015289.1-P	AT1G04100.1	21734647
AT1G19220.1	Bra015298.1-P	AT1G04250.1	21734647
AT1G19220.1	Bra030560.1-P	AT1G04250.1	21734647
AT1G19220.1	Bra032520.1-P	AT1G04250.1	21734647
AT1G19220.1	Bra026166.1-P	AT1G15050.1	21734647
AT1G19220.1	Bra017362.1-P	AT1G35240.1	21734647
AT1G19220.1	Bra018124.1-P	AT1G35240.1	21734647
AT1G19220.1	Bra027944.1-P	AT1G35240.1	21734647
AT1G19220.1	Bra034234.1-P	AT1G35240.1	21734647
AT1G19220.1	Bra014303.1-P	AT1G51950.1	18505759
AT1G19220.1	Bra018938.1-P	AT1G51950.1	18505759
AT1G19220.1	Bra040476.1-P	AT2G46990.1	21734647
AT1G19220.1	Bra040122.1-P	AT3G04730.1	21734647
AT1G19220.1	Bra040398.1-P	AT3G04730.1	21734647
AT1G19220.1	Bra001900.1-P	AT3G23050.1	21734647
AT1G19220.1	Bra033886.1-P	AT3G23050.1	21734647
AT1G19220.1	Bra039732.1-P	AT4G14560.1	21734647
AT1G19220.1	Bra039732.1-P	AT4G14560.1	9342315
AT1G19220.1	Bra002729.1-P	AT5G57420.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26690	Canola	nucleus	100.0	100.0
CDY41030	Canola	nucleus	98.28	97.45
Bra016517.1-P	Field mustard	nucleus	87.51	90.89
AT1G19220.1	Thale cress	nucleus	89.42	86.37
KRH37536	Soybean	nucleus	66.06	61.6
KRH12587	Soybean	nucleus	65.4	61.14
KRH19355	Soybean	nucleus	65.4	60.65
VIT_11s0016g00640.t01	Wine grape	nucleus	66.35	60.26
KRH02575	Soybean	nucleus	65.2	60.21
Bra025775.1-P	Field mustard	nucleus	26.88	60.0
GSMUA_Achr3P10240_001	Banana	nucleus	35.18	59.52
Bra020125.1-P	Field mustard	nucleus	61.58	58.73
Solyc07g042260.2.1	Tomato	nucleus	63.01	58.14
GSMUA_Achr9P18170_001	Banana	nucleus	46.43	57.03
PGSC0003DMT400006151	Potato	nucleus	62.82	56.96
Os06t0196700-02	Rice	nucleus	51.19	50.9
TraesCS7A01G160800.1	Wheat	nucleus	51.57	50.75
TraesCS7D01G161900.1	Wheat	nucleus	51.38	50.61
KXG19536	Sorghum	nucleus	50.33	50.14
Zm00001d045026_P002	Maize	nucleus	50.24	50.05
TraesCS7B01G065800.2	Wheat	plastid	51.1	49.58
HORVU7Hr1G033820.5	Barley	nucleus	50.05	49.25
Bra010776.1-P	Field mustard	nucleus	35.18	44.35
Bra004125.1-P	Field mustard	nucleus	32.6	43.85
Bra002327.1-P	Field mustard	nucleus	59.68	43.5
Bra028110.1-P	Field mustard	nucleus	34.13	42.42
Bra016492.1-P	Field mustard	nucleus	33.46	41.99
Bra014419.1-P	Field mustard	nucleus	21.45	40.54
Bra012190.1-P	Field mustard	nucleus	33.17	40.14
Bra013748.1-P	Field mustard	nucleus	21.64	37.71
Bra004530.1-P	Field mustard	nucleus	20.97	37.67
Bra019255.1-P	Field mustard	nucleus	22.12	37.24
Bra035427.1-P	Field mustard	nucleus	23.16	36.54
Bra034234.1-P	Field mustard	nucleus	18.78	36.41
Bra002479.1-P	Field mustard	nucleus	23.55	32.59
Bra027944.1-P	Field mustard	nucleus	16.87	32.24
Bra010048.1-P	Field mustard	nucleus	26.12	32.2
Bra018124.1-P	Field mustard	nucleus	16.49	31.17
Bra035910.1-P	Field mustard	nucleus	25.55	30.18
Bra017362.1-P	Field mustard	nucleus	15.06	29.26
Bra007632.1-P	Field mustard	nucleus	21.35	21.23

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01318	ProteinID:AFD01318.1
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra025720	EnsemblPlants:Bra025720.1	EnsemblPlants:Bra025720.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	UniProt:H9B4E5	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EMBL:JN979484	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF21	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002535825	SEG:seg	:	:

Description

AT1G19220 (E=4e-261) ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE FACTOR 19); DNA binding / transcription factor

Coordinates

chrA06:-:7463660..7467839

Molecular Weight (calculated)

116155.0 Da

IEP (calculated)

6.689

GRAVY (calculated)

-0.628

Length

1049 amino acids

Sequence
(BLAST)

0001: MKAPSNGFHP NPAEGEKKAI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKINR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL TLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSA GAAATTQLPS SYNLPNNFAP NDHSKLLNFQ SPNLSPANTQ FNKPNMVSHI SQQMQAQPAM VQSQQQLQQQ
0501: VQMSHQQLQQ QHHQHQQQGG YNSGSVNNGV SVVSNQVSCQ NQSAGFTQSQ LQQQSILSNG AKMTHQNIVS AGNKGSSQMT AQELQFQQQL ELHNSTQLLR
0601: NQQEQSSMHS LQQNPQQLQM QQQQSSKPSP SQQLQMQLLQ KLQQQQQSTP PPGSSSLQPQ LSSLQQTQSH QLQQLLSSQN QQPLPQSNNN GFMQPPQIQA
0701: SHHQQQGYMN NNKPIVRSQS GHIDGEAPSC STSPSANNTG HDNVSPTNFL SRNQQQGQAV SVPASNPVQQ GMVNLKSAGE QYKFKGAVTD QIDVTTAGTT
0801: YCPDVVVGPG QQQQQTFPLP SFGFDGDLQQ SQHPRNNLAF AGNLEAVNPD ALYSQKDFQN LVVPNYGNAP RDIETELSSA SQSFGIPSIP FKSGGSNEIG
0901: GINDSGIMNG GIWPNQAQRM RTYTKVQKRG SVGRSIDVTR YSGYEELRND LARMFGIEGQ LEDPQISDWK LVYTDHENDI LLVGDDPWEE FVNCVQNIKI
1001: LSSAEVQQMS LDGDLAAIPT TNQACSETDS GNAWKVHYED TSAAASFNR

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.