Factsheet for Bra016517.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001900.1-P
Bra002729.1-P
Bra014303.1-P
Bra015289.1-P
Bra015298.1-P
Bra017362.1-P
Bra018124.1-P
Bra018938.1-P
Bra026166.1-P
Bra027944.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra034234.1-P
Bra039732.1-P
Bra040122.1-P
Bra040398.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19220.1	Bra015289.1-P	AT1G04100.1	21734647
AT1G19220.1	Bra015298.1-P	AT1G04250.1	21734647
AT1G19220.1	Bra030560.1-P	AT1G04250.1	21734647
AT1G19220.1	Bra032520.1-P	AT1G04250.1	21734647
AT1G19220.1	Bra026166.1-P	AT1G15050.1	21734647
AT1G19220.1	Bra017362.1-P	AT1G35240.1	21734647
AT1G19220.1	Bra018124.1-P	AT1G35240.1	21734647
AT1G19220.1	Bra027944.1-P	AT1G35240.1	21734647
AT1G19220.1	Bra034234.1-P	AT1G35240.1	21734647
AT1G19220.1	Bra014303.1-P	AT1G51950.1	18505759
AT1G19220.1	Bra018938.1-P	AT1G51950.1	18505759
AT1G19220.1	Bra040476.1-P	AT2G46990.1	21734647
AT1G19220.1	Bra040122.1-P	AT3G04730.1	21734647
AT1G19220.1	Bra040398.1-P	AT3G04730.1	21734647
AT1G19220.1	Bra001900.1-P	AT3G23050.1	21734647
AT1G19220.1	Bra033886.1-P	AT3G23050.1	21734647
AT1G19220.1	Bra039732.1-P	AT4G14560.1	21734647
AT1G19220.1	Bra039732.1-P	AT4G14560.1	9342315
AT1G19220.1	Bra002729.1-P	AT5G57420.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96672	Canola	nucleus	98.71	97.75
Bra025720.1-P	Field mustard	nucleus	90.89	87.51
AT1G19220.1	Thale cress	nucleus	89.6	83.33
KRH37536	Soybean	nucleus	65.35	58.67
KRH12587	Soybean	nucleus	64.65	58.2
KRH19355	Soybean	nucleus	64.85	57.91
Bra025775.1-P	Field mustard	nucleus	26.93	57.87
VIT_11s0016g00640.t01	Wine grape	nucleus	65.74	57.49
KRH02575	Soybean	nucleus	64.55	57.39
GSMUA_Achr3P10240_001	Banana	nucleus	34.95	56.94
Bra020125.1-P	Field mustard	nucleus	61.78	56.73
Solyc07g042260.2.1	Tomato	nucleus	62.18	55.23
GSMUA_Achr9P18170_001	Banana	nucleus	46.53	55.04
PGSC0003DMT400006151	Potato	nucleus	61.78	53.93
Os06t0196700-02	Rice	nucleus	51.68	49.48
TraesCS7A01G160800.1	Wheat	nucleus	52.08	49.34
TraesCS7D01G161900.1	Wheat	nucleus	51.88	49.2
Zm00001d045026_P002	Maize	nucleus	50.89	48.81
KXG19536	Sorghum	nucleus	50.69	48.62
TraesCS7B01G065800.2	Wheat	plastid	51.58	48.2
HORVU7Hr1G033820.5	Barley	nucleus	50.59	47.94
Bra004125.1-P	Field mustard	nucleus	33.17	42.95
Bra010776.1-P	Field mustard	nucleus	35.05	42.55
Bra002327.1-P	Field mustard	nucleus	60.0	42.11
Bra028110.1-P	Field mustard	nucleus	34.16	40.88
Bra016492.1-P	Field mustard	nucleus	33.37	40.31
Bra012190.1-P	Field mustard	nucleus	33.27	38.75
Bra014419.1-P	Field mustard	nucleus	21.19	38.56
Bra004530.1-P	Field mustard	nucleus	20.99	36.3
Bra013748.1-P	Field mustard	nucleus	21.49	36.05
Bra019255.1-P	Field mustard	nucleus	22.18	35.96
Bra034234.1-P	Field mustard	nucleus	18.91	35.3
Bra035427.1-P	Field mustard	nucleus	22.97	34.89
Bra027944.1-P	Field mustard	nucleus	16.93	31.15
Bra002479.1-P	Field mustard	nucleus	23.37	31.13
Bra010048.1-P	Field mustard	nucleus	26.04	30.9
Bra018124.1-P	Field mustard	nucleus	16.53	30.09
Bra017362.1-P	Field mustard	nucleus	15.54	29.07
Bra035910.1-P	Field mustard	nucleus	25.15	28.6
Bra007632.1-P	Field mustard	nucleus	21.19	20.28

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01317	ProteinID:AFD01317.1
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra016517	EnsemblPlants:Bra016517.1	EnsemblPlants:Bra016517.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	EMBL:JN979483	UniProt:M4DJ39	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF21	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002546F24	SEG:seg	:	:

Description

AT5G20730 (E=7e-198) NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription activator/ transcription factor/ transcription regulator

Coordinates

chrA08:+:18849539..18853797

Molecular Weight (calculated)

111363.0 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.541

Length

1010 amino acids

Sequence
(BLAST)

0001: MKAPSNGFHP SSAEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGWSVFVS TKRLIAGDSV
0201: LFVRDEKSQL TLGLRLANRQ TPTLSSSVIS SDSMHIGILA AAAHANANNS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF ETEDCGVRRY
0301: MGTVTGVSDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS VWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGEE FGMKDAQSSM
0401: FPGLSLVQWM SMQQNNTLSA GAAATTQLPS AYNLPKNFAL NDPSKLLNFQ SPNLSPVNSQ FNKPNMVSSH ISQQMQVQPA MVKSQQQVQI SHQQLQQGVY
0501: NAGSVNNGVS VVSCQNQSTG FSQSQLQQQS MLSNGSAKMN HQSIVGNKSS SQMTSQELQF QQQMELHNSS QLLRTQQEQS SMHSLQQTPQ QLQMQQQSST
0601: PSPSQQLQLQ LLQKLQQQQQ STPPVSSSLQ PQLSAALQQT QSHQLQQLLS SQNQQPFSAP TFMQPPQVQV SHHQQQGHMN NKPLITAGGS HSGHTDGEVP
0701: TCSTSPSANN TRHDNVSPTN FLSRSQQQGQ AASVPAPDPV QSRNNQGMVN LRSAADQINV STAGTTYCPD AVGTAQQQQT FPLQSFGNCQ QRNNLAFAGN
0801: LEAVTTPDAL YSQKEFQNLV PNYGNAPRDI ETELSSAAIS SQSFGIPSIP FKSGGSNEIG GVNDSGIMNG GGLWPNQAQR MRTYTKVQKR GSVGRSIDVT
0901: RYSGYDELRN DLARMFGIEG QLEDPRPSDW KLVYTDHEND ILLVGDDPWE EFVNCVQNIK ILSSVEVQQM SLDGDLAAIP ATNQVCSETD SGNAWKVHYE
1001: DTSAAASFNR

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.