Factsheet for Solyc07g042260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g120380.2.1
Solyc03g121060.2.1
Solyc04g054280.1.1
Solyc05g008850.2.1
Solyc06g053840.2.1
Solyc07g019450.2.1
Solyc07g042260.2.1
Solyc08g008380.2.1
Solyc08g082630.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1
Solyc12g007230.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19220.1	Solyc09g083290.2.1	AT1G04250.1	21734647
AT1G19220.1	Solyc05g008850.2.1	AT1G15050.1	21734647
AT1G19220.1	Solyc08g008380.2.1	AT1G35240.1	21734647
AT1G19220.1	Solyc08g082630.2.1	AT1G35240.1	21734647
AT1G19220.1	Solyc03g121060.2.1	AT1G51950.1	18505759
AT1G19220.1	Solyc09g083290.2.1	AT3G23050.1	21734647
AT1G19220.1	Solyc04g054280.1.1	AT4G14560.1	21734647
AT1G19220.1	Solyc06g053840.2.1	AT4G14560.1	21734647
AT1G19220.1	Solyc09g083280.2.1	AT4G14560.1	21734647
AT1G19220.1	Solyc04g054280.1.1	AT4G14560.1	9342315
AT1G19220.1	Solyc06g053840.2.1	AT4G14560.1	9342315
AT1G19220.1	Solyc09g083280.2.1	AT4G14560.1	9342315
AT1G19220.1	Solyc07g019450.2.1	AT5G57420.1	21734647
AT5G20730.1	Solyc09g083290.2.1	AT1G04250.1	21734647
AT5G20730.1	Solyc03g121060.2.1	AT1G51950.1	18505759
AT5G20730.1	Solyc03g120380.2.1	AT1G52830.1	14729917
AT5G20730.1	Solyc03g120380.2.1	AT3G15540.1	14729917
AT5G20730.1	Solyc03g120380.2.1	AT3G15540.1	21734647
AT5G20730.1	Solyc09g083290.2.1	AT3G23050.1	21734647
AT5G20730.1	Solyc04g054280.1.1	AT4G14560.1	14729917
AT5G20730.1	Solyc06g053840.2.1	AT4G14560.1	14729917
AT5G20730.1	Solyc09g083280.2.1	AT4G14560.1	14729917
AT5G20730.1	Solyc04g054280.1.1	AT4G14560.1	21734647
AT5G20730.1	Solyc06g053840.2.1	AT4G14560.1	21734647
AT5G20730.1	Solyc09g083280.2.1	AT4G14560.1	21734647
AT5G20730.1	Solyc04g054280.1.1	AT4G14560.1	9342315
AT5G20730.1	Solyc06g053840.2.1	AT4G14560.1	9342315
AT5G20730.1	Solyc09g083280.2.1	AT4G14560.1	9342315
AT5G20730.1	Solyc12g007230.1.1	AT4G29080.1	21734647
AT5G20730.1	Solyc07g042260.2.1	AT5G20730.1	14729917

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006151	Potato	nucleus	96.92	95.25
VIT_11s0016g00640.t01	Wine grape	nucleus	71.5	70.39
KRH37536	Soybean	nucleus	67.81	68.53
KRH02575	Soybean	nucleus	68.43	68.49
KRH12587	Soybean	nucleus	67.46	68.36
KRH19355	Soybean	nucleus	67.81	68.17
Solyc12g006350.1.1	Tomato	nucleus	10.99	67.2
CDY41030	Canola	nucleus	58.75	63.14
CDY26690	Canola	nucleus	58.14	63.01
Bra025720.1-P	Field mustard	nucleus	58.14	63.01
CDX83778	Canola	nucleus	55.94	62.35
AT1G19220.1	Thale cress	nucleus	59.54	62.34
CDX96672	Canola	nucleus	55.85	62.25
Bra016517.1-P	Field mustard	nucleus	55.23	62.18
GSMUA_Achr9P18170_001	Banana	nucleus	46.7	62.18
Bra020125.1-P	Field mustard	nucleus	58.84	60.82
GSMUA_Achr3P10240_001	Banana	nucleus	33.07	60.65
CDX92437	Canola	nucleus	55.32	60.48
AT5G20730.1	Thale cress	nucleus	61.21	59.74
CDY45069	Canola	nucleus	57.78	59.03
Solyc07g043620.2.1	Tomato	nucleus	26.12	56.57
CDY16560	Canola	nucleus	50.13	54.7
Os06t0196700-02	Rice	nucleus	49.43	53.27
KXG19536	Sorghum	nucleus	49.08	52.99
TraesCS7D01G161900.1	Wheat	nucleus	49.43	52.77
TraesCS7A01G160800.1	Wheat	nucleus	49.43	52.72
Zm00001d045026_P002	Maize	nucleus	48.64	52.52
TraesCS7B01G065800.2	Wheat	plastid	49.16	51.71
HORVU7Hr1G033820.5	Barley	nucleus	47.85	51.03
Solyc07g016180.2.1	Tomato	nucleus	46.26	47.3
Solyc03g031970.2.1	Tomato	nucleus	34.65	46.68
Solyc02g037530.2.1	Tomato	nucleus	34.56	46.67
Solyc05g047460.2.1	Tomato	nucleus	44.59	46.22
Bra002327.1-P	Field mustard	nucleus	57.96	45.8
Solyc04g081240.2.1	Tomato	nucleus	33.25	40.65
Solyc01g103050.2.1	Tomato	nucleus	21.99	38.23
Solyc01g096070.2.1	Tomato	nucleus	20.93	34.54
Solyc08g082630.2.1	Tomato	nucleus	19.44	34.32
Solyc08g008380.2.1	Tomato	nucleus	20.58	34.26
Solyc12g042070.1.1	Tomato	nucleus	22.78	31.28
Solyc03g118290.2.1	Tomato	nucleus	23.22	31.21
Solyc11g069190.1.1	Tomato	nucleus	20.67	28.98

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4CE89	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF21
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	EnsemblPlantsGene:Solyc07g042260.2	EnsemblPlants:Solyc07g042260.2.1	UniParc:UPI000276BE0B
SEG:seg	:	:	:	:	:

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:K4CE89]

Coordinates

chr7:-:55363905..55371264

Molecular Weight (calculated)

127864.0 Da

IEP (calculated)

6.635

GRAVY (calculated)

-0.743

Length

1137 amino acids

Sequence
(BLAST)

0001: MKAPSNGYLP NSGEGERKLM NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDGIPSYPNL PSKLICMLHN VTLHADTETD EVYAQMTLQP
0101: VNKYDQEALL LSEMGLKQNR QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYAMQ PPAQELMARD LHDQTWTFRH IYRGQPKRHL LTTGWSVFIS
0201: SKRLCAGDSV LFIRDEKSQL LLGIKRTNRQ QPALSSSVIS SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF
0301: ETEESGVRRY MGTITGVSDL DPIRWKSSQW RNLQVGWDES TAGERPSRVS IWDIEPVVTP FYICPPPFFR PKFPKQPSFP GDESDIENVL KRGMPWINDE
0401: LGLKDAQNSI FPGLSLVQWM SMQQNNHVPV AQSGLPSVLH SNIGSDDHSK LLNFQSPALA TPGLQFNKPN QLNQPFGQIQ QPPLAWTQEQ QQSLQSPVSA
0501: QQQQQQQHTL QQQQQQQQHT LQQQQQQRHT LQQQQQQQTL QQQQQQQQQQ HTLQQQQQQQ HTLQHQQQHT LQQPQQHMLQ QQPQFHQQAQ QQLQQQQRPS
0601: QQQQLTGNSS PVNRCVSPNQ IPNQTFPQAA VYGQLQQQQV LSASTQSQQN VPVSRNSFPS TSLAQDFQFQ QQMEQQSNLL QKSQQQQTIP QQAPLQLLQQ
0701: SLMQRSQVQP SSQQSLTEQQ LQLQLLNKLQ QQQQQQQAQL LSPVSSTLEP RMPQQQQNRQ PQELQFAHQQ LSSNIVTTVT HLQSTHHAFN QLQNHHKSPI
0801: TIKALSGGTE GDAPSCSTSP STNNFQVSPP NFLTRNQGQA ILVDESVVDP SQEQNKSECR IKHELVFSKG SELSKYKGNN TENLEAASST TSYGLDSSGF
0901: NFSLPALCVD GDVQSHSRNI LPSAANNIDG LNPDALLSRD YDSGKDIQNL FSPFGNAPRD IETELSDAGI NSQQFGVPNM SYKPRCANDL AVNDNGILNN
1001: NAWTNQTQRM RTYTKVQKRG SVGRTIDVTR YIGYDELRHD LARMFGIEGQ LEDPQRTEWK LVYVDHENDI LLVGDDPWEE FVSCVQSIKI LSCAEVQQMS
1101: LNGDLGNVPV PNQASSGTDS GNAWKGHYDD NSAASFN

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.