Factsheet for Solyc11g069190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 12445130

gfp PMID: 12445130

B Jones, P Frasse, E Olmos, H Zegzouti, ZG Li, A Latché, JC Pech, M Bouzayen

UMR990 INRA/INP-ENSA Toulouse, 'Biologie Moléculaire et Physiologie de la Maturation des Fruits', Avenue de l'Agrobiopole, BP 107, 31326 Castanet-Tolosan Cedex, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g103050.2.1
Solyc03g120380.2.1
Solyc04g081240.2.1
Solyc08g008380.2.1
Solyc08g082630.2.1
Solyc11g069190.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60450.1	Solyc04g081240.2.1	AT1G19850.1	22096563
AT5G60450.1	Solyc08g008380.2.1	AT1G34310.1	22096563
AT5G60450.1	Solyc08g082630.2.1	AT1G34310.1	22096563
AT5G60450.1	Solyc03g120380.2.1	AT1G52830.1	22096563
AT5G60450.1	Solyc01g103050.2.1	AT1G59750.1	22096563
AT5G60450.1	Solyc11g069190.1.1	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020839	Potato	nucleus	98.52	98.52
KRH22924	Soybean	nucleus	34.03	75.62
VIT_06s0004g03130.t01	Wine grape	nucleus	71.76	72.93
KRG89021	Soybean	nucleus	64.98	66.54
KRH24914	Soybean	nucleus	64.73	66.29
KRH26391	Soybean	nucleus	64.49	65.46
CDX80168	Canola	nucleus	58.2	62.19
CDY31545	Canola	nucleus	57.83	61.96
Bra002479.1-P	Field mustard	nucleus	57.46	61.48
AT5G60450.1	Thale cress	nucleus	58.57	60.28
Solyc12g006350.1.1	Tomato	nucleus	11.96	52.15
Solyc01g103050.2.1	Tomato	nucleus	31.69	39.3
Solyc07g043620.2.1	Tomato	nucleus	23.8	36.76
Solyc08g082630.2.1	Tomato	nucleus	28.11	35.4
Solyc01g096070.2.1	Tomato	nucleus	29.59	34.83
Solyc08g008380.2.1	Tomato	nucleus	28.85	34.26
Solyc03g118290.2.1	Tomato	nucleus	33.66	32.27
Solyc12g042070.1.1	Tomato	nucleus	32.92	32.25
Solyc02g037530.2.1	Tomato	nucleus	29.96	28.86
Solyc03g031970.2.1	Tomato	nucleus	29.22	28.08
Solyc04g081240.2.1	Tomato	nucleus	29.35	25.59
Solyc07g016180.2.1	Tomato	nucleus	30.33	22.12
Solyc05g047460.2.1	Tomato	nucleus	29.47	21.79
Solyc07g042260.2.1	Tomato	nucleus	28.98	20.67

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EMBL:DQ340259	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009791	GO:GO:0009987	GO:GO:0010050	GO:GO:0010158	GO:GO:0030154	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF20	UniProt:Q2LAI9	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	EnsemblPlantsGene:Solyc11g069190.1	EnsemblPlants:Solyc11g069190.1.1	UniParc:UPI000068419D	SEG:seg

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:Q2LAI9]

Coordinates

chr11:-:53817628..53826053

Molecular Weight (calculated)

90335.7 Da

IEP (calculated)

6.159

GRAVY (calculated)

-0.465

Length

811 amino acids

Sequence
(BLAST)

001: MEIDLNHALV SEVEKNVCCN EECDKGGGGG CVNCSLYTST TSSCSSNVSS SSSLALTSIY KELWHACAGP LTSLPKKGNV VVYFPQGHME EAVSAFPFSP
101: VKIDLPTFGL QPQIFCRVED VQLLANKEND EVYTQLTLLP LPESMAISLE GKEHEDSGTD EEGNGVNPGK SASHMFCKTL TASDTTTHGG FSVPRRAAED
201: CFPPLDYKEQ RPSQELIAKD LHGVEWKFRH IYRGQPRRHL LTTGWSIFVS QKNLVSGDAV LFLRGEGGNL RLGIRRAARP RNGLPESIIK SQYSGPDVLS
301: SVATALSAKS TFHVFYSPRA SHADFVVPYQ KYVKAINSRI PVGTRFKMKF DLDDSPERRY SGVVTGISDM DPFRWPNSKW RCLMVRWDED IMSNHQERVS
401: PWEIDSSVSL PPLSIQSSPR LKKLRTSQQA PSVLDSHFAG GSALLDFEES IRSSKVLQGQ ENLGLISPPY GCDKPVRPLD FELQRVARHN LMPNGVENII
501: VGDFVKTQPP TTYTGFLESN RFPKVLQGQE ICSLRSLTGK GDVNFGAWGK PEFGCNVFGT YQRPRANFYP LASEGARNVF LPYNAMYRAG QDPVVPSYST
601: NFQRENPTLN QNSIQNVVRR EEVGMPKFVN EQRPPEMSKV SIPENHFKNE NDDSFNAQAP CKLFGFSLTK EPSTPSSQSS GKRSCTKVHK QGSLVGRAID
701: LSRLNGYDDL LVELERLFNM EDLLRDPNKG WRILYTDSEN DMMVVGDDPW HEFCEVVSKI HIYTQEEVEK MTIEGISDDT QSCLEEAPAI MDVSKSSSVG
801: QPDSSPTVIR I

Best Arabidopsis Sequence Match ( AT5G60450.1 )
(BLAST)

001: MEFDLNTEIA EVEEEENDDV GVGVGGGTRI DKGRLGISPS SSSSCSSGSS SSSSSTGSAS SIYSELWHAC AGPLTCLPKK GNVVVYFPQG HLEQDAMVSY
101: SSPLEIPKFD LNPQIVCRVV NVQLLANKDT DEVYTQVTLL PLQEFSMLNG EGKEVKELGG EEERNGSSSV KRTPHMFCKT LTASDTSTHG GFSVPRRAAE
201: DCFAPLDYKQ QRPSQELIAK DLHGVEWKFR HIYRGQPRRH LLTTGWSIFV SQKNLVSGDA VLFLRDEGGE LRLGIRRAAR PRNGLPDSII EKNSCSNILS
301: LVANAVSTKS MFHVFYSPRA THAEFVIPYE KYITSIRSPV CIGTRFRMRF EMDDSPERRC AGVVTGVCDL DPYRWPNSKW RCLLVRWDES FVSDHQERVS
401: PWEIDPSVSL PHLSIQSSPR PKRPWAGLLD TTPPGNPITK RGGFLDFEES VRPSKVLQGQ ENIGSASPSQ GFDVMNRRIL DFAMQSHANP VLVSSRVKDR
501: FGEFVDATGV NPACSGVMDL DRFPRVLQGQ EICSLKSFPQ FAGFSPAAAP NPFAYQANKS SYYPLALHGI RSTHVPYQNP YNAGNQSSGP PSRAINFGEE
601: TRKFDAQNEG GLPNNVTADL PFKIDMMGKQ KGSELNMNAS SGCKLFGFSL PVETPASKPQ SSSKRICTKV HKQGSQVGRA IDLSRLNGYD DLLMELERLF
701: NMEGLLRDPE KGWRILYTDS ENDMMVVGDD PWHDFCNVVW KIHLYTKEEV ENANDDNKSC LEQAALMMEA SKSSSVSQPD SSPTITRV

Arabidopsis Description

ARF4Auxin response factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.