Factsheet for Solyc02g037530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g120380.2.1
Solyc04g054280.1.1
Solyc06g053840.2.1
Solyc06g066020.2.1
Solyc08g021820.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	Solyc09g083290.2.1	AT1G04250.1	21734647
AT5G37020.1	Solyc03g120380.2.1	AT1G52830.1	14729917
AT5G37020.1	Solyc03g120380.2.1	AT3G15540.1	14729917
AT5G37020.1	Solyc03g120380.2.1	AT3G15540.1	21734647
AT5G37020.1	Solyc09g083290.2.1	AT3G23050.1	21734647
AT5G37020.1	Solyc04g054280.1.1	AT4G14560.1	14729917
AT5G37020.1	Solyc06g053840.2.1	AT4G14560.1	14729917
AT5G37020.1	Solyc09g083280.2.1	AT4G14560.1	14729917
AT5G37020.1	Solyc04g054280.1.1	AT4G14560.1	21734647
AT5G37020.1	Solyc06g053840.2.1	AT4G14560.1	21734647
AT5G37020.1	Solyc09g083280.2.1	AT4G14560.1	21734647
AT5G37020.1	Solyc06g066020.2.1	AT4G32280.1	21734647
AT5G37020.1	Solyc08g021820.2.1	AT4G32280.1	21734647
AT5G37020.1	Solyc04g054280.1.1	AT5G43700.1	21734647
AT5G37020.1	Solyc06g053840.2.1	AT5G43700.1	21734647
AT5G37020.1	Solyc09g083280.2.1	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g031970.2.1	Tomato	nucleus	81.95	81.75
Solyc12g006350.1.1	Tomato	nucleus	18.05	81.72
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	28.5	80.27
KRH17251	Soybean	nucleus	74.58	74.5
KRH72896	Soybean	nucleus	74.58	74.14
KRH30740	Soybean	nucleus	74.23	74.05
KRG98044	Soybean	nucleus	73.28	73.36
Solyc07g043620.2.1	Tomato	nucleus	43.71	70.1
AT5G37020.1	Thale cress	nucleus	64.61	67.08
CDY53537	Canola	nucleus	64.37	66.58
CDX74594	Canola	nucleus	64.49	66.3
GSMUA_Achr4P25960_001	Banana	nucleus	62.47	65.67
CDY39274	Canola	nucleus	60.69	65.6
CDY07460	Canola	nucleus	60.57	65.3
Bra004125.1-P	Field mustard	nucleus	60.45	65.26
GSMUA_Achr11P...	Banana	nucleus	62.71	65.19
VIT_04s0079g00200.t01	Wine grape	nucleus	54.16	64.5
Bra028110.1-P	Field mustard	nucleus	64.37	64.22
KXG27404	Sorghum	nucleus	61.64	63.37
Zm00001d001879_P036	Maize	nucleus	61.16	63.04
Os04t0671900-01	Rice	nucleus	61.16	62.96
TraesCS2A01G547800.1	Wheat	nucleus	60.33	61.13
GSMUA_AchrUn_...	Banana	mitochondrion	37.05	61.06
TraesCS2D01G548900.1	Wheat	nucleus	60.33	60.98
TraesCS2B01G578500.1	Wheat	nucleus	60.21	60.86
HORVU2Hr1G121110.32	Barley	nucleus	60.57	60.86
Zm00001d026590_P003	Maize	nucleus	58.79	58.37
GSMUA_Achr8P13620_001	Banana	nucleus	24.11	41.94
Solyc01g103050.2.1	Tomato	nucleus	29.57	38.07
Solyc04g081240.2.1	Tomato	nucleus	40.86	36.99
Solyc08g082630.2.1	Tomato	nucleus	27.32	35.71
Solyc07g016180.2.1	Tomato	nucleus	46.56	35.25
Solyc07g042260.2.1	Tomato	nucleus	46.67	34.56
Solyc05g047460.2.1	Tomato	nucleus	45.01	34.55
Solyc08g008380.2.1	Tomato	nucleus	27.79	34.26
Solyc01g096070.2.1	Tomato	nucleus	28.03	34.25
Solyc11g069190.1.1	Tomato	nucleus	28.86	29.96
Solyc12g042070.1.1	Tomato	nucleus	29.45	29.95
Solyc03g118290.2.1	Tomato	nucleus	30.05	29.91

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	UniProt:K4B5U7	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF2	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	EnsemblPlantsGene:Solyc02g037530.2	EnsemblPlants:Solyc02g037530.2.1	UniParc:UPI00027678FE	SEG:seg

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:K4B5U7]

Coordinates

chr2:+:31048794..31059050

Molecular Weight (calculated)

94282.0 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.476

Length

842 amino acids

Sequence
(BLAST)

001: MKLSTSGMGQ QAHEGGEKKC LNSELWHACA GPLVCLPTVG SRVVYFPQGH SEQVAATTNK EVDAHIPNYP NLSPQLICQL HNVTMHADVE TDEVYAQMTL
101: QPLTPEEQKD TYLPVEFGIP SKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QTPPAQELIA RDLHDVEWKF RHIFRGQPKR HLLTTGWSVF
201: VSAKRLVAGD SVLFIWNEKN QLLLGIRRAV RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSCFNVFFNP RASPSEFVIP LSKYIKAVYH TRVSVGMRFR
301: MLFETEESSV RRYMGTITGI GDLDPVRWAN SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYPSLF PLRLKRPFYQ GTSSYQDSNN EAINRMSWLR
401: GNAGELGHHS MNLQSFGMLP WMQQRVDSTI LPNDINQHYQ AMLATGLQSF GSGDLLKQQL MQFQQPVQYL QHASTENSIL HQQQQQQQQI MQQAVHQHML
501: PAQTQMLSEN LQRQSQHQSN NQSEEQAHQH TYQEAFQLPH DQLQQRQPSN VTSPFLKADF ADLTSKFSAS VAPSGVQNML GSLCSEGSNN SLNINRTGQS
601: VIIEQSPQQS WMSKFTESQL NTCSNSSSLP TYGKDTSNPR GNCSLDSQNQ ALFGANIDSS GHLLPTTVSN VTTTCADMSL MPLGASGYQN SLYGYVQDSS
701: ELLHNAGQID PPNATHTFVK VYKSGCVGRS LDITQFHSYH ELRRELGQMF GIEGFLEDPQ RSGWQLVFVD RENDILLLGD DPWEAFVNNV WYIKILSPED
801: VQKLGKEEAE SLNRGAVERM SSTNADDRDL ISGMPSLGSL EY

Best Arabidopsis Sequence Match ( AT5G37020.1 )
(BLAST)

001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L

Arabidopsis Description

ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.