Factsheet for GSMUA_Achr8P13620_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P12630_001
GSMUA_Achr4P05200_001
GSMUA_Achr4P21020_001
GSMUA_Achr4P21030_001
GSMUA_Achr4P22520_001
GSMUA_Achr4P22530_001
GSMUA_Achr5P03110_001
GSMUA_Achr8P20610_001
GSMUA_Achr8P20620_001
GSMUA_Achr8P29850_001
GSMUA_Achr9P10690_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P16800_001
GSMUA_Achr9P24330_001
GSMUA_Achr9P25550_001
GSMUA_Achr9P26900_001
GSMUA_Achr9P26910_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G37020.1	GSMUA_Achr10P...	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr4P21020_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr4P22520_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr8P20610_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr9P10700_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr9P25550_001	AT1G04250.1	21734647
AT5G37020.1	GSMUA_Achr10P...	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr4P21020_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr4P22520_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr8P20610_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr9P10700_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr9P25550_001	AT3G23050.1	21734647
AT5G37020.1	GSMUA_Achr8P29850_001	AT3G62100.1	21734647
AT5G37020.1	GSMUA_Achr9P16800_001	AT3G62100.1	21734647
AT5G37020.1	GSMUA_Achr11P...	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr2P12630_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr4P05200_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr4P21030_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr4P22530_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr5P03110_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr8P20620_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr9P10690_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr9P24330_001	AT4G14560.1	14729917
AT5G37020.1	GSMUA_Achr11P...	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr2P12630_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr4P05200_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr4P21030_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr4P22530_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr5P03110_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr8P20620_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr9P10690_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr9P24330_001	AT4G14560.1	21734647
AT5G37020.1	GSMUA_Achr9P26900_001	AT4G32280.1	21734647
AT5G37020.1	GSMUA_Achr9P26910_001	AT4G32280.1	21734647
AT5G37020.1	GSMUA_Achr11P...	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr2P12630_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr4P05200_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr4P21030_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr4P22530_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr5P03110_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr8P20620_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr9P10690_001	AT5G43700.1	21734647
AT5G37020.1	GSMUA_Achr9P24330_001	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0079g00200.t01	Wine grape	nucleus	44.42	30.41
GSMUA_Achr11P...	Banana	nucleus	47.52	28.4
PGSC0003DMT400048034	Potato	nucleus	42.15	27.13
GSMUA_Achr4P25960_001	Banana	nucleus	41.94	25.34
AT5G37020.1	Thale cress	nucleus	42.36	25.28
KRH17251	Soybean	nucleus	43.59	25.03
Os04t0671900-01	Rice	nucleus	41.94	24.82
KRH72896	Soybean	nucleus	43.39	24.79
KRH30740	Soybean	nucleus	42.98	24.64
KRG98044	Soybean	nucleus	42.56	24.49
Bra004125.1-P	Field mustard	nucleus	39.46	24.49
Zm00001d001879_P036	Maize	nucleus	41.32	24.48
CDY07460	Canola	nucleus	39.46	24.46
KXG27404	Sorghum	nucleus	41.32	24.42
CDY39274	Canola	nucleus	39.26	24.39
CDY53537	Canola	nucleus	40.7	24.2
CDX74594	Canola	nucleus	40.91	24.18
Solyc02g037530.2.1	Tomato	nucleus	41.94	24.11
Solyc03g031970.2.1	Tomato	nucleus	41.74	23.93
Zm00001d026590_P003	Maize	nucleus	41.53	23.7
Bra028110.1-P	Field mustard	nucleus	41.32	23.7
GSMUA_Achr5P26580_001	Banana	nucleus	39.46	23.67
TraesCS2B01G578500.1	Wheat	nucleus	40.7	23.65
TraesCS2A01G547800.1	Wheat	nucleus	40.5	23.59
GSMUA_Achr5P02450_001	Banana	nucleus	40.29	23.55
TraesCS2D01G548900.1	Wheat	nucleus	40.5	23.53
HORVU2Hr1G121110.32	Barley	nucleus	40.7	23.51
GSMUA_Achr3P23290_001	Banana	nucleus	39.05	23.05
GSMUA_Achr6P19850_001	Banana	nucleus	40.7	23.04
GSMUA_Achr11P...	Banana	nucleus	38.22	22.32
GSMUA_Achr5P00590_001	Banana	nucleus	41.53	22.11
GSMUA_Achr11P...	Banana	nucleus	41.12	21.8
GSMUA_Achr5P05010_001	Banana	nucleus	30.79	17.11
GSMUA_Achr1P08230_001	Banana	mitochondrion	22.73	16.57
GSMUA_Achr3P05460_001	Banana	nucleus	33.26	16.55
GSMUA_Achr9P14090_001	Banana	nucleus	30.79	16.37
GSMUA_Achr9P18170_001	Banana	nucleus	27.89	15.81
GSMUA_Achr8P23850_001	Banana	nucleus	32.64	14.81
GSMUA_Achr1P20040_001	Banana	nucleus	23.55	14.58
GSMUA_Achr6P36980_001	Banana	nucleus	25.21	14.22
GSMUA_Achr6P01740_001	Banana	nucleus	29.55	13.76
GSMUA_AchrUn_...	Banana	mitochondrion	14.05	13.31
GSMUA_Achr6P08090_001	Banana	nucleus	21.9	12.86
GSMUA_Achr10P...	Banana	nucleus	17.77	12.76
GSMUA_Achr10P...	Banana	nucleus	21.69	12.74
GSMUA_AchrUn_...	Banana	nucleus	16.53	12.6
GSMUA_Achr3P10240_001	Banana	nucleus	16.12	12.58
GSMUA_Achr1P20000_001	Banana	nucleus	24.79	12.36
GSMUA_Achr10P...	Banana	nucleus	16.94	12.29
GSMUA_Achr6P16450_001	Banana	nucleus	22.11	12.26
GSMUA_Achr2P19760_001	Banana	nucleus	16.74	12.13
GSMUA_Achr7P24330_001	Banana	nucleus	16.53	12.01
GSMUA_Achr6P12780_001	Banana	nucleus	17.15	11.93
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	25.41	11.71
GSMUA_AchrUn_...	Banana	nucleus	20.87	11.43
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	16.32	11.33
GSMUA_Achr6P07390_001	Banana	nucleus	15.29	11.3
GSMUA_Achr9P08310_001	Banana	vacuole	8.88	8.83
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	2.27	3.68

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr8G13620_001	EnsemblPlants:GSMUA_Achr8P13620_001	EnsemblPlants:GSMUA_Achr8T13620_001	InterPro:IPR000270
UniProt:M0TQ65	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF06507	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF2	SUPFAM:SSF54277	UniParc:UPI000296F6FE	SEG:seg	:	:

Description

Auxin response factor 12 [Source:GMGC_GENE;Acc:GSMUA_Achr8G13620_001]

Coordinates

chr8:-:10378613..10383038

Molecular Weight (calculated)

54493.7 Da

IEP (calculated)

4.889

GRAVY (calculated)

-0.548

Length

484 amino acids

Sequence
(BLAST)

001: MRFRMLFETE ECSIRRYMGT ITGTSDLDPV RWPNSHWRSV KVGWDESTAG ERQPRVSLWE IEPLTTFPMY PSLFPLRLNR PWHLGGPFSQ DTKEDELNAP
101: IWLRNDAGEQ GSHPFNSPSL DMGSWMHERL EPLLSGNEVS QYQTMSAAAL EAIRGVDILR PHLLQYQQPF QFLQHLQHQD FQQVISSPSL RLLENQPTSV
201: PQQQLQQLLS EQHKQQVQQT HAYADTFEIP NNHPQQQSSL SSQFYEKPII PDSSFNIFPI TTSSSVQGIF GSTYPEGNTD LLNCSQLGQS QQPMKPKHNE
301: SQVTPFGAGA LLPSFAEKDG SGGNQNCPSF QNHVSSLLSI AAPNLTMNAT LGDASATPYV ASCIQNSLYG YLDESSNLLQ NSGESNPQSQ TFVKVYKSGS
401: VGRSLDISRF SNYDELRVEL GHMFGVGGLL EDPRRSGWQL VFVDRENDVI LLGDDPWESF VNNVWYIKIL SPEDLHKMGK QGID

Best Arabidopsis Sequence Match ( AT1G30330.2 )
(BLAST)

001: MRLSSAGFNP QPHEVTGEKR VLNSELWHAC AGPLVSLPPV GSRVVYFPQG HSEQVAASTN KEVDAHIPNY PSLHPQLICQ LHNVTMHADV ETDEVYAQMT
101: LQPLNAQEQK DPYLPAELGV PSRQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELM ARDLHDNEWK FRHIFRGQPK RHLLTTGWSV
201: FVSAKRLVAG DSVLFIWNDK NQLLLGIRRA NRPQTVMPSS VLSSDSMHLG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF
301: RMLFETEESS VRRYMGTITG ICDLDPTRWA NSHWRSVKVG WDESTAGERQ PRVSLWEIEP LTTFPMYPSP FPLRLKRPWP PGLPSFHGLK EDDMGMSMSS
401: PLMWDRGLQS LNFQGMGVNP WMQPRLDTSG LLGMQNDVYQ AMAAAALQDM RGIDPAKAAA SLLQFQNSPG FSMQSPSLVQ PQMLQQQLSQ QQQQLSQQQQ
501: QQQQLSQQQQ QQLSQQQQQQ LSQQQQQQLS QQQQQQAYLG VPETHQPQSQ AQSQSNNHLS QQQQQVVDNH NPSASSAAVV SAMSQFGSAS QPNTSPLQSM
601: TSLCHQQSFS DTNGGNNPIS PLHTLLSNFS QDESSQLLHL TRTNSAMTSS GWPSKRPAVD SSFQHSGAGN NNTQSVLEQL GQSHTSNVPP NAVSLPPFPG
701: GRECSIEQEG SASDPHSHLL FGVNIDSSSL LMPNGMSNLR SIGIEGGDST TLPFTSSNFN NDFSGNLAMT TPSSCIDESG FLQSSENLGS ENPQSNTFVK
801: VYKSGSFGRS LDISKFSSYH ELRSELARMF GLEGQLEDPV RSGWQLVFVD RENDVLLLGD DPWPEFVSSV WCIKILSPQE VQQMGKRGLE LLNSAPSSNN
901: VDKLPSNGNC DDFGNRSDPR NLGNGIASVG GSFNY

Arabidopsis Description

ARF6Auxin response factor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.