Factsheet for GSMUA_Achr1P20010_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

nucleus 4
plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P20000_001
GSMUA_Achr1P20010_001
GSMUA_Achr1P20040_001
GSMUA_Achr2P12630_001
GSMUA_Achr2P19760_001
GSMUA_Achr3P16300_001
GSMUA_Achr4P05200_001
GSMUA_Achr4P21020_001
GSMUA_Achr4P21030_001
GSMUA_Achr4P22520_001
GSMUA_Achr4P22530_001
GSMUA_Achr5P03110_001
GSMUA_Achr5P09310_001
GSMUA_Achr6P07390_001
GSMUA_Achr6P12780_001
GSMUA_Achr6P29070_001
GSMUA_Achr6P36980_001
GSMUA_Achr7P13680_001
GSMUA_Achr7P24330_001
GSMUA_Achr8P20610_001
GSMUA_Achr8P20620_001
GSMUA_Achr8P29850_001
GSMUA_Achr9P08310_001
GSMUA_Achr9P10690_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P16800_001
GSMUA_Achr9P24330_001
GSMUA_Achr9P25550_001
GSMUA_Achr9P26900_001
GSMUA_Achr9P26910_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19850.1	GSMUA_Achr10P...	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr4P21020_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr4P22520_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr8P20610_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr9P10700_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr9P25550_001	AT1G04250.1	21734647
AT1G19850.1	GSMUA_Achr1P20000_001	AT1G19850.1	14729917
AT1G19850.1	GSMUA_Achr1P20010_001	AT1G19850.1	14729917
AT1G19850.1	GSMUA_Achr1P20040_001	AT1G19850.1	14729917
AT1G19850.1	GSMUA_Achr6P36980_001	AT1G19850.1	14729917
AT1G19850.1	GSMUA_Achr1P20000_001	AT1G19850.1	21734647
AT1G19850.1	GSMUA_Achr1P20010_001	AT1G19850.1	21734647
AT1G19850.1	GSMUA_Achr1P20040_001	AT1G19850.1	21734647
AT1G19850.1	GSMUA_Achr6P36980_001	AT1G19850.1	21734647
AT1G19850.1	GSMUA_Achr1P20000_001	AT1G19850.1	22096563
AT1G19850.1	GSMUA_Achr1P20010_001	AT1G19850.1	22096563
AT1G19850.1	GSMUA_Achr1P20040_001	AT1G19850.1	22096563
AT1G19850.1	GSMUA_Achr6P36980_001	AT1G19850.1	22096563
AT1G19850.1	GSMUA_Achr1P20000_001	AT1G19850.1	24485461
AT1G19850.1	GSMUA_Achr1P20010_001	AT1G19850.1	24485461
AT1G19850.1	GSMUA_Achr1P20040_001	AT1G19850.1	24485461
AT1G19850.1	GSMUA_Achr6P36980_001	AT1G19850.1	24485461
AT1G19850.1	GSMUA_Achr10P...	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr6P07390_001	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr6P12780_001	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr6P29070_001	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr9P08310_001	AT1G59750.1	22096563
AT1G19850.1	GSMUA_Achr8P29850_001	AT3G17600.1	21734647
AT1G19850.1	GSMUA_Achr9P16800_001	AT3G17600.1	21734647
AT1G19850.1	GSMUA_Achr10P...	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr4P21020_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr4P22520_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr8P20610_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr9P10700_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr9P25550_001	AT3G23050.1	21734647
AT1G19850.1	GSMUA_Achr10P...	AT3G61830.1	22096563
AT1G19850.1	GSMUA_Achr2P19760_001	AT3G61830.1	22096563
AT1G19850.1	GSMUA_Achr7P24330_001	AT3G61830.1	22096563
AT1G19850.1	GSMUA_AchrUn_...	AT3G61830.1	22096563
AT1G19850.1	GSMUA_Achr11P...	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr2P12630_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr4P05200_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr4P21030_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr4P22530_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr5P03110_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr8P20620_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr9P10690_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr9P24330_001	AT4G14560.1	14729917
AT1G19850.1	GSMUA_Achr11P...	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr2P12630_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr4P05200_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr4P21030_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr4P22530_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr5P03110_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr8P20620_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr9P10690_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr9P24330_001	AT4G14560.1	22096563
AT1G19850.1	GSMUA_Achr11P...	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr2P12630_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr4P05200_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr4P21030_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr4P22530_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr5P03110_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr8P20620_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr9P10690_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr9P24330_001	AT4G14560.1	9342315
AT1G19850.1	GSMUA_Achr9P26900_001	AT4G32280.1	21734647
AT1G19850.1	GSMUA_Achr9P26910_001	AT4G32280.1	21734647
AT1G19850.1	GSMUA_Achr3P16300_001	AT5G25890.1	21734647
AT1G19850.1	GSMUA_Achr5P09310_001	AT5G25890.1	21734647
AT1G19850.1	GSMUA_Achr7P13680_001	AT5G25890.1	21734647
AT1G19850.1	GSMUA_AchrUn_...	AT5G25890.1	21734647
AT1G19850.1	GSMUA_Achr3P16300_001	AT5G25890.1	22096563
AT1G19850.1	GSMUA_Achr5P09310_001	AT5G25890.1	22096563
AT1G19850.1	GSMUA_Achr7P13680_001	AT5G25890.1	22096563
AT1G19850.1	GSMUA_AchrUn_...	AT5G25890.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P20000_001	Banana	nucleus	66.67	72.09
GSMUA_Achr1P20040_001	Banana	nucleus	50.57	67.9
GSMUA_Achr6P36980_001	Banana	nucleus	50.0	61.19
Bra025775.1-P	Field mustard	nucleus	27.05	60.43
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	14.67	51.51
Bra016492.1-P	Field mustard	nucleus	34.95	43.9
CDY62586	Canola	nucleus	35.05	43.5
CDX83741	Canola	nucleus	34.95	43.38
CDY61164	Canola	nucleus	35.33	43.09
EES13038	Sorghum	nucleus	38.57	42.81
VIT_18s0001g13930.t01	Wine grape	nucleus	38.76	42.71
CDY29392	Canola	nucleus	35.62	42.69
TraesCS2D01G491200.2	Wheat	nucleus	38.67	42.51
TraesCS2B01G519200.2	Wheat	nucleus	38.67	42.51
TraesCS2A01G491000.1	Wheat	nucleus	38.67	42.51
Solyc04g081240.2.1	Tomato	nucleus	37.62	42.47
Bra012190.1-P	Field mustard	nucleus	35.05	42.45
CDY01393	Canola	nucleus	34.95	42.43
PGSC0003DMT400009660	Potato	nucleus	37.43	42.3
Os04t0664400-01	Rice	nucleus	37.05	42.28
AT1G19850.1	Thale cress	nucleus	36.19	42.13
CDY39348	Canola	nucleus	35.24	42.09
KRH05923	Soybean	nucleus	37.24	41.91
HORVU2Hr1G109650.18	Barley	nucleus	38.19	41.9
Zm00001d001945_P002	Maize	nucleus	37.81	41.88
KRH17404	Soybean	nucleus	37.05	41.83
Zm00001d026540_P002	Maize	nucleus	37.9	41.5
GSMUA_AchrUn_...	Banana	mitochondrion	19.52	40.12
GSMUA_Achr5P02450_001	Banana	nucleus	29.05	36.84
GSMUA_Achr3P23290_001	Banana	nucleus	28.67	36.71
GSMUA_Achr5P26580_001	Banana	nucleus	28.19	36.68
GSMUA_Achr3P10240_001	Banana	nucleus	21.43	36.29
GSMUA_Achr4P25960_001	Banana	nucleus	27.33	35.83
GSMUA_Achr11P...	Banana	nucleus	28.0	35.46
GSMUA_Achr6P19850_001	Banana	nucleus	28.86	35.44
GSMUA_Achr11P...	Banana	nucleus	27.33	35.43
GSMUA_Achr9P18170_001	Banana	nucleus	27.71	34.07
GSMUA_Achr9P14090_001	Banana	nucleus	29.43	33.96
GSMUA_Achr5P00590_001	Banana	nucleus	28.67	33.11
GSMUA_Achr11P...	Banana	nucleus	28.76	33.08
GSMUA_Achr9P08310_001	Banana	vacuole	14.67	31.62
GSMUA_Achr1P08230_001	Banana	mitochondrion	19.9	31.48
GSMUA_Achr3P05460_001	Banana	nucleus	29.14	31.45
GSMUA_Achr5P05010_001	Banana	nucleus	25.81	31.11
GSMUA_Achr10P...	Banana	nucleus	19.62	30.56
GSMUA_Achr6P01740_001	Banana	nucleus	29.81	30.13
GSMUA_Achr6P07390_001	Banana	nucleus	18.67	29.92
GSMUA_Achr2P19760_001	Banana	nucleus	18.86	29.64
GSMUA_Achr8P23850_001	Banana	nucleus	30.1	29.62
GSMUA_Achr6P12780_001	Banana	nucleus	19.52	29.45
GSMUA_AchrUn_...	Banana	nucleus	17.81	29.45
GSMUA_Achr7P24330_001	Banana	nucleus	18.57	29.28
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	19.24	28.98
GSMUA_Achr10P...	Banana	nucleus	18.29	28.79
GSMUA_Achr6P08090_001	Banana	nucleus	22.0	28.03
GSMUA_Achr10P...	Banana	nucleus	21.14	26.94
GSMUA_Achr6P16450_001	Banana	nucleus	21.9	26.35
GSMUA_AchrUn_...	Banana	nucleus	21.71	25.79
GSMUA_Achr8P13620_001	Banana	nucleus	11.71	25.41

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G20010_001
EnsemblPlants:GSMUA_Achr1P20010_001	EnsemblPlants:GSMUA_Achr1T20010_001	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	UniProt:M0S1F9
InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF10	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI000295EB62	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G20010_001]

Coordinates

chr1:+:15020891..15036356

Molecular Weight (calculated)

117993.0 Da

IEP (calculated)

6.659

GRAVY (calculated)

-0.035

Length

1050 amino acids

Sequence
(BLAST)

0001: MTLIIFCYMF CMDNYRSSSF SAPTSVKICS VLEDVQWMML KWCPPNANAV KICSLDCCFW CLEGDTTYFV VGCLREVFGS RDDGCSMEVP LLLRGEAVVH
0101: HSVFSFVSIQ VNLLRLLVED VFHSNKCRVS GLKNAAALLD EMKLLGDVPS KPSARKVLNS EFWHACAGPL VSLPQPGSLL NYFPQGYSEQ VLFFLIISFC
0201: FKPSFLSQKK ILIKLLLQII KSIHSLADKE TDKIYAQMTL QPVSSVRFSS CFVELHILIL ICKHPTEIFC KILIVSDTST HGGFSVPRRA AEKLFPQLVR
0301: RLFNATSKSE LIVRDLHDNL WTFRHIYRGQ PKRHLLTTGW SLFVSAKRLK AGDSVLFIRD EKSQLLLGVR RANRKQTALT SSVLSTDSMH IGVLAVAAHA
0401: VASRSPFTVY YNRRACSSEF IIPLTKYHKA AYTQLSIGMR FGMMFETESS KSRLYMGTIV GISDYDPVRW PNSRWQNLQV EWYEHGYGER PDTVSLWEIE
0501: TPESLFAFPN ATSSLKRQCL RGYVGSPYHT HRWEPKIDVE LVCEILFSLQ TPFRPEIYNV IYPAHILVPR NFILFNNALK FFLMCAVEMF PISYVPNFPT
0601: FAIIPFQQSL HHEPKLILGL QQSVDYDLKG TAASKYCPAI NNQFVNLKPF TNPTEDGNVD TQHFFACFGS ENFSRLLNKP CNLNCDGLLG HHQSIYAGIL
0701: QNVRSRELSR SFSVIMLALH TMGSSTQREV VTTAAMQQKQ HFSTAENAAT SSADLSLMAN PNNFEPTETF QLSCISDSGT PQCITTDIQE YFGTQLNSLG
0801: DELLVQGILS SEVHDLDVQG DCTVLQGVSI SYGIMDLFEE SNNQGETIGN LHLDPINESM DMGHVPGAAM DGLSPIGSSW FQIPSVMPVC NFTSNQESLS
0901: HITSTRMTDS VFSLQDVPDS SAGTSSASIA TNDCSLYRGS RKQACRQPLR TCTKVQKVGS VGRSIDVTRF SNYYELRSAV ACMFGLEGQL DDPHGSEWKL
1001: VYIYYENDVL LVGDDPWEEF INCVKCIRIL SPSEVQQMSW EGMQLMDGFA

Best Arabidopsis Sequence Match ( AT1G19220.1 )
(BLAST)

0001: MKAPSNGFLP SSNEGEKKPI NSQLWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKQ TDFIPNYPNL PSKLICLLHS VTLHADTETD EVYAQMTLQP
0101: VNKYDREALL ASDMGLKLNR QPTEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHDTTWTFRH IYRGQPKRHL LTTGWSVFVS
0201: TKRLFAGDSV LFVRDEKSQL MLGIRRANRQ TPTLSSSVIS SDSMHIGILA AAAHANANSS PFTIFFNPRA SPSEFVVPLA KYNKALYAQV SLGMRFRMMF
0301: ETEDCGVRRY MGTVTGISDL DPVRWKGSQW RNLQVGWDES TAGDRPSRVS IWEIEPVITP FYICPPPFFR PKYPRQPGMP DDELDMENAF KRAMPWMGED
0401: FGMKDAQSSM FPGLSLVQWM SMQQNNPLSG SATPQLPSAL SSFNLPNNFA SNDPSKLLNF QSPNLSSANS QFNKPNTVNH ISQQMQAQPA MVKSQQQQQQ
0501: QQQQHQHQQQ QLQQQQQLQM SQQQVQQQGI YNNGTIAVAN QVSCQSPNQP TGFSQSQLQQ QSMLPTGAKM THQNINSMGN KGLSQMTSFA QEMQFQQQLE
0601: MHNSSQLLRN QQEQSSLHSL QQNLSQNPQQ LQMQQQSSKP SPSQQLQLQL LQKLQQQQQQ QSIPPVSSSL QPQLSALQQT QSHQLQQLLS SQNQQPLAHG
0701: NNSFPASTFM QPPQIQVSPQ QQGQMSNKNL VAAGRSHSGH TDGEAPSCST SPSANNTGHD NVSPTNFLSR NQQQGQAASV SASDSVFERA SNPVQELYTK
0801: TESRISQGMM NMKSAGEHFR FKSAVTDQID VSTAGTTYCP DVVGPVQQQQ TFPLPSFGFD GDCQSHHPRN NLAFPGNLEA VTSDPLYSQK DFQNLVPNYG
0901: NTPRDIETEL SSAAISSQSF GIPSIPFKPG CSNEVGGIND SGIMNGGGLW PNQTQRMRTY TKVQKRGSVG RSIDVTRYSG YDELRHDLAR MFGIEGQLED
1001: PLTSDWKLVY TDHENDILLV GDDPWEEFVN CVQNIKILSS VEVQQMSLDG DLAAIPTTNQ ACSETDSGNA WKVHYEDTSA AASFNR

Arabidopsis Description

ARF19Auxin response factor 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8RYC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.