CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90903
KRG92429
KRG92430
KRH05923
KRH06026
KRH06451
KRH09813
KRH17404
KRH23504
KRH26266
KRH34375
KRH34377
KRH35895
KRH44390
KRH47514
KRH47893
KRH51289
KRH52428
KRH61758
KRH68924
KRH69048

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19850.1	KRG92429	AT1G04250.1	21734647
AT1G19850.1	KRH34377	AT1G04250.1	21734647
AT1G19850.1	KRG90903	AT1G15050.1	21734647
AT1G19850.1	KRH35895	AT1G15050.1	21734647
AT1G19850.1	KRH05923	AT1G19850.1	14729917
AT1G19850.1	KRH17404	AT1G19850.1	14729917
AT1G19850.1	KRH05923	AT1G19850.1	21734647
AT1G19850.1	KRH17404	AT1G19850.1	21734647
AT1G19850.1	KRH05923	AT1G19850.1	22096563
AT1G19850.1	KRH17404	AT1G19850.1	22096563
AT1G19850.1	KRH05923	AT1G19850.1	24485461
AT1G19850.1	KRH17404	AT1G19850.1	24485461
AT1G19850.1	KRH09813	AT1G52830.1	14729917
AT1G19850.1	KRH23504	AT1G52830.1	14729917
AT1G19850.1	KRH44390	AT1G52830.1	14729917
AT1G19850.1	KRH47514	AT1G52830.1	14729917
AT1G19850.1	KRH06026	AT1G59750.1	22096563
AT1G19850.1	KRH26266	AT1G59750.1	22096563
AT1G19850.1	KRH51289	AT1G59750.1	22096563
AT1G19850.1	KRH09813	AT3G15540.1	14729917
AT1G19850.1	KRH23504	AT3G15540.1	14729917
AT1G19850.1	KRH44390	AT3G15540.1	14729917
AT1G19850.1	KRH47514	AT3G15540.1	14729917
AT1G19850.1	KRH09813	AT3G15540.1	22096563
AT1G19850.1	KRH23504	AT3G15540.1	22096563
AT1G19850.1	KRH44390	AT3G15540.1	22096563
AT1G19850.1	KRH47514	AT3G15540.1	22096563
AT1G19850.1	KRG92429	AT3G23050.1	21734647
AT1G19850.1	KRH34377	AT3G23050.1	21734647
AT1G19850.1	KRH06451	AT3G61830.1	22096563
AT1G19850.1	KRH47893	AT3G61830.1	22096563
AT1G19850.1	KRH68924	AT3G61830.1	22096563
AT1G19850.1	KRG92430	AT4G14560.1	14729917
AT1G19850.1	KRH34375	AT4G14560.1	14729917
AT1G19850.1	KRH69048	AT4G14560.1	14729917
AT1G19850.1	KRG92430	AT4G14560.1	22096563
AT1G19850.1	KRH34375	AT4G14560.1	22096563
AT1G19850.1	KRH69048	AT4G14560.1	22096563
AT1G19850.1	KRG92430	AT4G14560.1	9342315
AT1G19850.1	KRH34375	AT4G14560.1	9342315
AT1G19850.1	KRH69048	AT4G14560.1	9342315
AT1G19850.1	KRH52428	AT4G32280.1	21734647
AT1G19850.1	KRH61758	AT4G32280.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05923	Soybean	nucleus	95.91	95.61
Bra025775.1-P	Field mustard	nucleus	40.32	79.79
VIT_18s0001g13930.t01	Wine grape	nucleus	69.03	67.37
KRH58711	Soybean	nucleus	27.2	64.38
CDY61164	Canola	nucleus	57.2	61.79
Bra016492.1-P	Field mustard	nucleus	55.27	61.48
CDY01393	Canola	nucleus	56.99	61.27
CDY62586	Canola	nucleus	55.7	61.23
PGSC0003DMT400009660	Potato	nucleus	61.08	61.14
Bra012190.1-P	Field mustard	nucleus	56.99	61.13
CDX83741	Canola	nucleus	55.48	60.99
CDY29392	Canola	nucleus	57.42	60.96
Solyc04g081240.2.1	Tomato	nucleus	60.86	60.86
CDY39348	Canola	nucleus	56.99	60.3
AT1G19850.1	Thale cress	nucleus	58.17	59.98
GSMUA_Achr1P20040_001	Banana	nucleus	44.09	52.43
GSMUA_Achr6P36980_001	Banana	nucleus	45.38	49.18
EES13038	Sorghum	nucleus	45.7	44.93
Os04t0664400-01	Rice	nucleus	43.87	44.35
KRH22924	Soybean	nucleus	17.31	44.11
Zm00001d026540_P002	Maize	nucleus	45.48	44.11
TraesCS2A01G491000.1	Wheat	nucleus	45.16	43.98
TraesCS2D01G491200.2	Wheat	nucleus	45.05	43.87
Zm00001d001945_P002	Maize	nucleus	44.62	43.78
TraesCS2B01G519200.2	Wheat	nucleus	44.95	43.77
HORVU2Hr1G109650.18	Barley	nucleus	44.62	43.36
GSMUA_Achr1P20000_001	Banana	nucleus	43.76	41.92
KRH30740	Soybean	nucleus	37.42	41.23
KRG98044	Soybean	nucleus	37.2	41.14
KRH72896	Soybean	nucleus	37.31	40.97
KRH17251	Soybean	nucleus	36.99	40.81
KRH73577	Soybean	nucleus	38.92	40.4
KRH14545	Soybean	nucleus	38.39	39.84
KRH42603	Soybean	nucleus	38.06	39.12
KRH11131	Soybean	nucleus	37.63	38.98
KRH21113	Soybean	nucleus	37.53	38.95
KRH06026	Soybean	nucleus	26.77	37.44
KRH51289	Soybean	nucleus	27.1	37.39
KRH26266	Soybean	nucleus	26.67	37.29
GSMUA_Achr1P20010_001	Banana	plasma membrane, plastid	41.83	37.05
KRH75716	Soybean	nucleus	26.45	35.55
KRH68924	Soybean	nucleus	25.05	35.2
KRH00001	Soybean	nucleus	24.84	34.79
KRH65922	Soybean	nucleus	25.7	34.59
KRH37536	Soybean	nucleus	41.61	34.4
KRH49135	Soybean	nucleus	24.52	34.34
KRH12587	Soybean	nucleus	41.08	34.05
KRH02575	Soybean	nucleus	41.51	33.98
KRH60117	Soybean	nucleus	40.0	33.85
KRH49070	Soybean	nucleus	40.32	33.78
KRH19355	Soybean	nucleus	41.08	33.78
KRH74145	Soybean	nucleus	39.25	33.06
KRH41404	Soybean	nucleus	39.46	32.97
KRH06451	Soybean	nucleus	25.16	32.68
KRH47893	Soybean	nucleus	24.95	32.4
KRG89021	Soybean	nucleus	26.77	31.44
KRH24914	Soybean	nucleus	26.56	31.19
KRH68102	Soybean	nucleus	19.57	30.85
KRG96367	Soybean	nucleus	22.37	30.72
KRH54110	Soybean	nucleus	27.74	30.61
KRH63855	Soybean	nucleus	27.63	30.49
KRH59742	Soybean	nucleus	28.06	30.42
KRH41062	Soybean	nucleus	27.74	30.32
KRH26391	Soybean	nucleus	25.7	29.91

Protein Annotations

EntrezGene:100790289	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EMBL:ACUP02009087
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_14G217700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	UniProt:I1MC56	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
EnsemblPlants:KRH17404	ProteinID:KRH17404	ProteinID:KRH17404.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF10	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002964C12	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr14:-:48242771..48249860

Molecular Weight (calculated)

103505.0 Da

IEP (calculated)

5.839

GRAVY (calculated)

-0.407

Length

930 amino acids

Sequence
(BLAST)

001: MMASVEEKIK TGGGMIVGGQ TLAAEMKLLK EMQEHSGVRK TLNSELWHAC AGPLVSLPQV GSLVFYFPQG HSEQVAASTR RTATSQIPNY PNLPYQLLCQ
101: VQNVTLHADK ETDEIYAQMT LQPLNSEREV FPISDFGHKH SKHPSEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYT IQPPTQELVV RDLHDNTWTF
201: RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDERS QLRVGVRRVN RQQTTLPSSV LSADSMHIGV LAAAAHAAAN RSPFTIFYNP RACPSEFVIP
301: LAKYRKSVFG TQVSVGMRFG MMFETEESGK RRYMGTIVGI SDVDPLRWPG SKWRNIQVEW DEPGCGDKQN RVSVWEIETP ESLFIFPSLT SGLKRPLPSG
401: LLENEWGTLL RRPFIRVPEN GTMELSNSIP NLYSEHMMRM LLKPQLINNN GAFLSAMQQE SAATRGPLQE MKTTLAAENQ MPLKNLHPHS IPDQPNALNM
501: QSLLKNDQPE KLHPLGKIDN HLSSGIVIDK PKSESEVLPD HVIDYPSMEG CNIEKVAANP VNQQGLANQL PFHNQNQSPL LPQSSPWPMP PQIELSMPHP
601: QMIDMVQADS AMVNGLFPQL DINEWMSYAS SQPFAGQNRP TGPLSDLQEH TSLQPQVVNP PLPSMNNEVW DHYVKNLKFL SQADQLTSIC QPGLYGLNGI
701: PSSNNLRDLS AESNNQSEIC VNVDASNSVG TTVVDPSTSS TILDEFCTMK DREFQNPQDC MVGNLSSSQD VQSQITSASL TESHAFPLRD IPDNSGGTSS
801: SHVDFDESSF LQNNSWQQVP APIRTYTKVQ KAGSVGRSID VTTFKNYEEL IRAIECMFGL DGLLNDTKCS GWKLVYVDYE SDVLLVGDDP WEEFVGCVRC
901: IRILSPSEVQ QMSEEGMKLL NSGALQGMNV

Best Arabidopsis Sequence Match ( AT1G19850.1 )
(BLAST)

001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS

Arabidopsis Description

ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.