CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89021
KRH00001
KRH05923
KRH06026
KRH09813
KRH17404
KRH22924
KRH23504
KRH24914
KRH26266
KRH26391
KRH44390
KRH47514
KRH49135
KRH51289
KRH65922
KRH75716

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60450.1	KRH05923	AT1G19850.1	22096563
AT5G60450.1	KRH17404	AT1G19850.1	22096563
AT5G60450.1	KRH00001	AT1G34310.1	22096563
AT5G60450.1	KRH49135	AT1G34310.1	22096563
AT5G60450.1	KRH65922	AT1G34310.1	22096563
AT5G60450.1	KRH75716	AT1G34310.1	22096563
AT5G60450.1	KRH09813	AT1G52830.1	22096563
AT5G60450.1	KRH23504	AT1G52830.1	22096563
AT5G60450.1	KRH44390	AT1G52830.1	22096563
AT5G60450.1	KRH47514	AT1G52830.1	22096563
AT5G60450.1	KRH06026	AT1G59750.1	22096563
AT5G60450.1	KRH26266	AT1G59750.1	22096563
AT5G60450.1	KRH51289	AT1G59750.1	22096563
AT5G60450.1	KRG89021	AT5G60450.1	22096563
AT5G60450.1	KRH22924	AT5G60450.1	22096563
AT5G60450.1	KRH24914	AT5G60450.1	22096563
AT5G60450.1	KRH26391	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26391	Soybean	nucleus	94.52	43.18
KRH58711	Soybean	nucleus	44.93	41.73
KRG89021	Soybean	nucleus	84.93	39.14
KRH24914	Soybean	nucleus	83.56	38.51
VIT_06s0004g03130.t01	Wine grape	nucleus	78.08	35.71
CDY31545	Canola	nucleus	71.23	34.35
Bra002479.1-P	Field mustard	nucleus	71.23	34.3
CDX80168	Canola	nucleus	71.23	34.26
Solyc11g069190.1.1	Tomato	nucleus	75.62	34.03
PGSC0003DMT400020839	Potato	nucleus	75.62	34.03
AT5G60450.1	Thale cress	nucleus	71.78	33.25
KRH06026	Soybean	nucleus	44.93	24.66
KRH26266	Soybean	nucleus	44.93	24.66
KRH51289	Soybean	nucleus	44.38	24.04
KRH68924	Soybean	nucleus	43.29	23.87
KRH49135	Soybean	nucleus	40.82	22.44
KRH00001	Soybean	nucleus	40.55	22.29
KRH06451	Soybean	nucleus	43.29	22.07
KRH47893	Soybean	nucleus	43.01	21.93
KRH75716	Soybean	nucleus	41.1	21.68
KRH65922	Soybean	nucleus	40.55	21.42
KRG96367	Soybean	nucleus	39.18	21.12
KRH59742	Soybean	nucleus	47.95	20.4
KRH41062	Soybean	nucleus	47.4	20.33
KRH68102	Soybean	nucleus	32.05	19.83
KRH54110	Soybean	nucleus	45.75	19.81
KRH63855	Soybean	nucleus	45.75	19.81
KRH17251	Soybean	nucleus	45.48	19.69
KRH30740	Soybean	nucleus	45.48	19.67
KRH72896	Soybean	nucleus	45.21	19.48
KRG98044	Soybean	nucleus	44.66	19.38
KRH73577	Soybean	nucleus	45.21	18.42
KRH21113	Soybean	nucleus	44.93	18.3
KRH11131	Soybean	nucleus	44.93	18.26
KRH14545	Soybean	nucleus	44.66	18.19
KRH42603	Soybean	nucleus	44.38	17.9
KRH17404	Soybean	nucleus	44.11	17.31
KRH05923	Soybean	nucleus	44.11	17.26
KRH19355	Soybean	nucleus	44.93	14.5
KRH74145	Soybean	nucleus	43.56	14.4
KRH02575	Soybean	nucleus	44.66	14.35
KRH37536	Soybean	nucleus	44.11	14.31
KRH12587	Soybean	nucleus	43.56	14.17
KRH49070	Soybean	nucleus	42.74	14.05
KRH60117	Soybean	nucleus	42.19	14.01
KRH41404	Soybean	nucleus	41.64	13.66

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	UniProt:A0A0R0GXJ1	EMBL:ACUP02008443	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_13G3280002	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR003340
InterPro:IPR015300	EnsemblPlants:KRH22924	ProteinID:KRH22924	ProteinID:KRH22924.1	PFAM:PF02362	PFAM:PF06507
PANTHER:PTHR31384	PANTHER:PTHR31384:SF20	SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0006ED9933	SEG:seg

Description

hypothetical protein

Coordinates

chr13:+:42266563..42269684

Molecular Weight (calculated)

40915.3 Da

IEP (calculated)

7.222

GRAVY (calculated)

-0.519

Length

365 amino acids

Sequence
(BLAST)

001: MEIDLNDDAV TSEAEKSASC NEECEKGAAF ALSSSTCSSS GSSSARVSSS YLELWHACAG PLTSLPKKGN VVVYFPQGHL EQASSFSPFS PMEMPTYDLQ
101: PQIFSRVVNI QLLANKENDE VYTQVTLLPR AEYLEGKELE ELGTDEEGNE ATPTKSTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPRL DYKQQRPSQE
201: LVAKDLHGVE WKFRHIYRGQ PRRHLLTTGW SIFVSQKNLV SEMQGENGEL RLGIRRAARP RNGLPESIVG SQSYYPNFLS SVANAISAKS MFHVFYSPRA
301: SHADFVVPYQ KYIKSIKNPV TIGTRFKMKF EMDESPERRC TSGIVTGMSD LDPYKWPKSK WRCLM

Best Arabidopsis Sequence Match ( AT2G33860.1 )
(BLAST)

001: MGGLIDLNVM ETEEDETQTQ TPSSASGSVS PTSSSSASVS VVSSNSAGGG VCLELWHACA GPLISLPKRG SLVLYFPQGH LEQAPDFSAA IYGLPPHVFC
101: RILDVKLHAE TTTDEVYAQV SLLPESEDIE RKVREGIIDV DGGEEDYEVL KRSNTPHMFC KTLTASDTST HGGFSVPRRA AEDCFPPLDY SQPRPSQELL
201: ARDLHGLEWR FRHIYRGQPR RHLLTTGWSA FVNKKKLVSG DAVLFLRGDD GKLRLGVRRA SQIEGTAALS AQYNQNMNHN NFSEVAHAIS THSVFSISYN
301: PKASWSNFII PAPKFLKVVD YPFCIGMRFK ARVESEDASE RRSPGIISGI SDLDPIRWPG SKWRCLLVRW DDIVANGHQQ RVSPWEIEPS GSISNSGSFV
401: TTGPKRSRIG FSSGKPDIPV SEGIRATDFE ESLRFQRVLQ GQEIFPGFIN TCSDGGAGAR RGRFKGTEFG DSYGFHKVLQ GQETVPAYSI TDHRQQHGLS
501: QRNIWCGPFQ NFSTRILPPS VSSSPSSVLL TNSNSPNGRL EDHHGGSGRC RLFGFPLTDE TTAVASATAV PCVEGNSMKG ASAVQSNHHH SQGRDIYAMR
601: DMLLDIAL

Arabidopsis Description

ARF3Auxin response factor 3 [Source:UniProtKB/Swiss-Prot;Acc:O23661]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.