CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89021
KRH00001
KRH05923
KRH06026
KRH09813
KRH17404
KRH22924
KRH23504
KRH24914
KRH26266
KRH26391
KRH44390
KRH47514
KRH49135
KRH51289
KRH65922
KRH75716

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60450.1	KRH05923	AT1G19850.1	22096563
AT5G60450.1	KRH17404	AT1G19850.1	22096563
AT5G60450.1	KRH00001	AT1G34310.1	22096563
AT5G60450.1	KRH49135	AT1G34310.1	22096563
AT5G60450.1	KRH65922	AT1G34310.1	22096563
AT5G60450.1	KRH75716	AT1G34310.1	22096563
AT5G60450.1	KRH09813	AT1G52830.1	22096563
AT5G60450.1	KRH23504	AT1G52830.1	22096563
AT5G60450.1	KRH44390	AT1G52830.1	22096563
AT5G60450.1	KRH47514	AT1G52830.1	22096563
AT5G60450.1	KRH06026	AT1G59750.1	22096563
AT5G60450.1	KRH26266	AT1G59750.1	22096563
AT5G60450.1	KRH51289	AT1G59750.1	22096563
AT5G60450.1	KRG89021	AT5G60450.1	22096563
AT5G60450.1	KRH22924	AT5G60450.1	22096563
AT5G60450.1	KRH24914	AT5G60450.1	22096563
AT5G60450.1	KRH26391	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22924	Soybean	nucleus	43.18	94.52
KRH24914	Soybean	nucleus	78.85	79.55
KRG89021	Soybean	nucleus	78.22	78.91
VIT_06s0004g03130.t01	Wine grape	nucleus	70.46	70.55
Solyc11g069190.1.1	Tomato	nucleus	65.46	64.49
PGSC0003DMT400020839	Potato	nucleus	65.21	64.24
CDX80168	Canola	nucleus	58.95	62.06
CDY31545	Canola	nucleus	58.7	61.96
Bra002479.1-P	Field mustard	nucleus	58.45	61.61
AT5G60450.1	Thale cress	nucleus	59.2	60.03
KRH58711	Soybean	nucleus	23.03	46.82
KRH06026	Soybean	nucleus	32.92	39.55
KRH26266	Soybean	nucleus	32.79	39.4
KRH51289	Soybean	nucleus	32.29	38.28
KRH68924	Soybean	nucleus	30.04	36.25
KRH00001	Soybean	nucleus	29.04	34.94
KRH49135	Soybean	nucleus	28.66	34.49
KRH59742	Soybean	nucleus	36.55	34.03
KRH06451	Soybean	nucleus	30.41	33.94
KRH41062	Soybean	nucleus	36.05	33.84
KRH47893	Soybean	nucleus	30.29	33.8
KRH75716	Soybean	nucleus	29.04	33.53
KRH54110	Soybean	nucleus	35.17	33.33
KRH63855	Soybean	nucleus	35.17	33.33
KRH65922	Soybean	nucleus	28.66	33.14
KRH68102	Soybean	nucleus	24.28	32.88
KRG96367	Soybean	nucleus	27.28	32.2
KRH17251	Soybean	nucleus	30.91	29.3
KRH30740	Soybean	nucleus	30.66	29.03
KRH72896	Soybean	nucleus	30.66	28.93
KRG98044	Soybean	nucleus	30.41	28.89
KRH73577	Soybean	nucleus	30.79	27.46
KRH11131	Soybean	nucleus	30.66	27.28
KRH21113	Soybean	nucleus	30.41	27.12
KRH14545	Soybean	nucleus	30.16	26.9
KRH42603	Soybean	nucleus	30.04	26.52
KRH17404	Soybean	nucleus	29.91	25.7
KRH05923	Soybean	nucleus	29.66	25.4
KRH60117	Soybean	nucleus	30.79	22.38
KRH49070	Soybean	nucleus	30.16	21.71
KRH19355	Soybean	nucleus	30.66	21.66
KRH74145	Soybean	nucleus	29.91	21.65
KRH02575	Soybean	nucleus	30.54	21.48
KRH41404	Soybean	nucleus	29.79	21.38
KRH37536	Soybean	nucleus	29.91	21.24
KRH12587	Soybean	nucleus	29.79	21.21

Protein Annotations

EntrezGene:100812909	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EMBL:ACUP02007710
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	EnsemblPlantsGene:GLYMA_12G171000	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	UniProt:I1LTG4	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EnsemblPlants:KRH26391
ProteinID:KRH26391	ProteinID:KRH26391.1	InterPro:PB1_dom	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863
PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF20	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277
UniParc:UPI000294E73F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:32643701..32649463

Molecular Weight (calculated)

88737.1 Da

IEP (calculated)

6.934

GRAVY (calculated)

-0.438

Length

799 amino acids

Sequence
(BLAST)

001: MEIDLNDAVT SEAEKSASCN GECEKGAALS SPTCSSSGSS STRVSSSYIE LWHACAGPLT SLPKKGNVVV YFPQGHLEQA ASFSPFSPME MPTYDLQPQI
101: FCRVVNIQLL ANKENDEVYT QVTLLPQAEL AGMYMEGKEL EKLGADEEGN ETTPTKSTPH MFCKTLTASD TSTHGGFSVP RRAAEDCFPP LDYKKQRPSQ
201: ELVAKDLHGV EWKFRHIYRG QPRRHLLTTG WSIFVSQKNL VSGDAVLFLR GENGELRLGI RRAARPRNGL PESIVGSQSY YPNFLSSVAN AISAKSMFHV
301: FYSPRASHAD FAVPYQKYIK SIKNPVTIGT RFKMKFEMDE SPERRCTSGI VTGMSDLDPY KWPKSKWRCL MVRWDEDIEI NHQDRVSPWE VDPSASLPPL
401: SIQSSRRLKK LRPGLLAAAP NHLTTVGSSG FMDSEESVRS SKVLQGQENT GFMSLYYGCD TVTKQPEFEI RSPSHPNLAS TGVRKIAAAE FMRVHPSSYA
501: GFTETNMFPR VLQGQEICPF RSLAGKVDLN FGSWGKPNVS YTNYNLHQAT KPNFHSFGPE VVQTAYFPYG DIHKAGQGSS MLCSNPTNFQ REDIPFNTPS
601: IQSGITIPNE QKLQDNISGA ASLGANMRIP NDDNFKGKVN ACKLFGFPLS RETTAQNLQN SSKRSCTKVH KQGSLVGRAI DLSRLSSYND LLIELERLFS
701: MEGLLIDPNK GWRILYTDSE NDIMVVGDDP WHLPFVCSEF CDVVSKIHIH TQEEVEKMTI GMMINDDSQS CLEQAPVMVE ASKSSSVGQP DSSPTVVRM

Best Arabidopsis Sequence Match ( AT5G60450.2 )
(BLAST)

001: MEFDLNTEIA EVEEEENDDV GVGVGGGTRI DKGSASSIYS ELWHACAGPL TCLPKKGNVV VYFPQGHLEQ DAMVSYSSPL EIPKFDLNPQ IVCRVVNVQL
101: LANKDTDEVY TQVTLLPLQE FSMLNGEGKE VKELGGEEER NGSSSVKRTP HMFCKTLTAS DTSTHGGFSV PRRAAEDCFA PLDYKQQRPS QELIAKDLHG
201: VEWKFRHIYR GQPRRHLLTT GWSIFVSQKN LVSGDAVLFL RDEGGELRLG IRRAARPRNG LPDSIIEKNS CSNILSLVAN AVSTKSMFHV FYSPRATHAE
301: FVIPYEKYIT SIRSPVCIGT RFRMRFEMDD SPERRCAGVV TGVCDLDPYR WPNSKWRCLL VRWDESFVSD HQERVSPWEI DPSVSLPHLS IQSSPRPKRP
401: WAGLLDTTPP GNPITKRGGF LDFEESVRPS KVLQGQENIG SASPSQGFDV MNRRILDFAM QSHANPVLVS SRVKDRFGEF VDATGVNPAC SGVMDLDRFP
501: RVLQGQEICS LKSFPQFAGF SPAAAPNPFA YQANKSSYYP LALHGIRSTH VPYQNPYNAG NQSSGPPSRA INFGEETRKF DAQNEGGLPN NVTADLPFKI
601: DMMGKQKGSE LNMNASSGCK LFGFSLPVET PASKPQSSSK RICTKVHKQG SQVGRAIDLS RLNGYDDLLM ELERLFNMEG LLRDPEKGWR ILYTDSENDM
701: MVVGDDPWHD FCNVVWKIHL YTKEEVENAN DDNKSCLEQA ALMMEASKSS SVSQPDSSPT ITRV

Arabidopsis Description

ARF4Auxin response factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.