Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G519200.2 | Wheat | nucleus | 98.32 | 98.32 |
| TraesCS2A01G491000.1 | Wheat | nucleus | 98.32 | 98.32 |
| HORVU2Hr1G109650.18 | Barley | nucleus | 94.87 | 94.67 |
| Os04t0664400-01 | Rice | nucleus | 76.65 | 79.57 |
| EES13038 | Sorghum | nucleus | 78.64 | 79.39 |
| Zm00001d026540_P002 | Maize | nucleus | 77.7 | 77.37 |
| Zm00001d001945_P002 | Maize | nucleus | 74.87 | 75.42 |
| Bra025775.1-P | Field mustard | nucleus | 33.3 | 67.66 |
| GSMUA_Achr1P20040_001 | Banana | nucleus | 44.92 | 54.86 |
| GSMUA_Achr6P36980_001 | Banana | nucleus | 46.7 | 51.98 |
| Bra016492.1-P | Field mustard | nucleus | 41.15 | 47.01 |
| CDY62586 | Canola | nucleus | 41.26 | 46.57 |
| CDX83741 | Canola | nucleus | 41.15 | 46.45 |
| CDY61164 | Canola | nucleus | 41.78 | 46.34 |
| CDY01393 | Canola | nucleus | 41.88 | 46.24 |
| Bra012190.1-P | Field mustard | nucleus | 41.88 | 46.14 |
| VIT_18s0001g13930.t01 | Wine grape | nucleus | 45.86 | 45.96 |
| CDY29392 | Canola | nucleus | 41.99 | 45.78 |
| CDY39348 | Canola | nucleus | 41.88 | 45.51 |
| AT1G19850.1 | Thale cress | nucleus | 42.72 | 45.23 |
| KRH17404 | Soybean | nucleus | 43.87 | 45.05 |
| KRH05923 | Soybean | nucleus | 43.87 | 44.91 |
| Solyc04g081240.2.1 | Tomato | nucleus | 43.04 | 44.19 |
| PGSC0003DMT400009660 | Potato | nucleus | 42.72 | 43.92 |
| GSMUA_Achr1P20000_001 | Banana | nucleus | 44.61 | 43.87 |
| GSMUA_Achr1P20010_001 | Banana | plasma membrane, plastid | 42.51 | 38.67 |
| TraesCS2D01G548900.1 | Wheat | nucleus | 33.61 | 38.54 |
| TraesCS7D01G449900.2 | Wheat | nucleus | 34.66 | 36.45 |
| TraesCS5D01G045700.2 | Wheat | nucleus | 34.03 | 36.11 |
| TraesCS6D01G127600.2 | Wheat | nucleus | 34.14 | 35.17 |
| TraesCS2D01G307600.1 | Wheat | nucleus | 23.46 | 34.25 |
| TraesCS7D01G161900.1 | Wheat | nucleus | 35.92 | 32.21 |
| TraesCS7D01G250100.4 | Wheat | nucleus | 35.39 | 30.95 |
| TraesCS6D01G102300.1 | Wheat | nucleus | 35.08 | 29.67 |
| TraesCS3D01G434700.1 | Wheat | nucleus | 24.71 | 29.65 |
| TraesCS7D01G409700.1 | Wheat | nucleus | 35.29 | 28.68 |
| TraesCS3D01G166700.1 | Wheat | nucleus | 22.09 | 27.84 |
| TraesCS3D01G442000.7 | Wheat | nucleus | 24.19 | 26.07 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp |
| InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009725 | GO:GO:0009733 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 |
| GO:GO:0009908 | GO:GO:0009942 | GO:GO:0009987 | GO:GO:0010051 | GO:GO:0010305 | GO:GO:0016020 |
| GO:GO:0042802 | GO:GO:0044212 | GO:GO:0048364 | GO:GO:0048507 | InterPro:IPR000270 | InterPro:IPR003340 |
| InterPro:IPR015300 | InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 |
| PFscan:PS51745 | PANTHER:PTHR31384 | PANTHER:PTHR31384:SF10 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS2D01G491200 | EnsemblPlants:TraesCS2D01G491200.2 | TIGR:cd10017 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2D:+:589973755..589978548
Molecular Weight (calculated)
105373.0 Da
IEP (calculated)
6.192
GRAVY (calculated)
-0.553
Length
955 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASQEKQQ QLLPTFGVLR NAAALLDEMQ LMGEAQGAKK VINSELWHAC AGPLVCLPQR GSLVYYFPQG HSEQVAATTK KTPNSRIPNY PSLPSQLLCQ
101: VHNITMHADK DTDEVYAQMT LQPVNSETDV FPIPSLGSYA KSKHPAEYFC KNLTASDTST HGGFSVPRRA AEKLFPQLDY SMQPPNQELI VRDLHDNMWT
201: FRHIYRGQPK RHLLTTGWSL FVGAKRLKAG DSVLFIRDEK SQLLVGVRRA TNQQTALSSS VLSTDSMHIG VLAAAAHAAS SGSSFTIYYN PRTSPSPFVV
301: PVARYNKANY IQQSVGMRMA MMFETEESSK RRYTGTIVGV SDSDPMRWPN SKWRNLQIEW DEHGYGERPE RVSIWDIETP ENTIVFPSAS LNSKRQCLPG
401: YGVPGLDIAS VNMSPFQRAP GNPYGNLQHM PAVGSELAMM MFLNQSGQNM GTPLSCHQSS YSSIIQNVKQ NYMPPSTFGH PIGSIKPESM PSNEAQQQQL
501: HAPKMQRGDS ESCEVQPAAD SVSASELHVA GREPRNTDKY PSQSISEQNG KGEPRVKPRR SKKGSSRKTI SENSELSSAP SRICDDQQHV SEAELVSCDT
601: KHVNCGNNEG SSGALTHGDF AGQLQCQQVE QNELVSPPKL ESSISPDGGK SVNSFPNQAS FSQFFDGLDW MVQPPNYQDS NGIQSVSASE NIFSPSANIG
701: STINTDTLET FQNSCLSDCF PNSIQDFIGS PDLHSLTFLS PEMQNLDVHH DGSNVPSTSN SYVQMSFSEE DSGNHMESMQ RGMNNISSCS QPQTTEGFNL
801: GMYSKLPSLK ESQVLSLPEI HNSSRGTSSC SMDAAEYSIG RSAKPMKPPV RTYTKVQKLG SVGRSIDVTR YRDYRELRSA IASMFGLQGK LEHPASSDWK
901: LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS ENGMQVLNDC IQADQ
101: VHNITMHADK DTDEVYAQMT LQPVNSETDV FPIPSLGSYA KSKHPAEYFC KNLTASDTST HGGFSVPRRA AEKLFPQLDY SMQPPNQELI VRDLHDNMWT
201: FRHIYRGQPK RHLLTTGWSL FVGAKRLKAG DSVLFIRDEK SQLLVGVRRA TNQQTALSSS VLSTDSMHIG VLAAAAHAAS SGSSFTIYYN PRTSPSPFVV
301: PVARYNKANY IQQSVGMRMA MMFETEESSK RRYTGTIVGV SDSDPMRWPN SKWRNLQIEW DEHGYGERPE RVSIWDIETP ENTIVFPSAS LNSKRQCLPG
401: YGVPGLDIAS VNMSPFQRAP GNPYGNLQHM PAVGSELAMM MFLNQSGQNM GTPLSCHQSS YSSIIQNVKQ NYMPPSTFGH PIGSIKPESM PSNEAQQQQL
501: HAPKMQRGDS ESCEVQPAAD SVSASELHVA GREPRNTDKY PSQSISEQNG KGEPRVKPRR SKKGSSRKTI SENSELSSAP SRICDDQQHV SEAELVSCDT
601: KHVNCGNNEG SSGALTHGDF AGQLQCQQVE QNELVSPPKL ESSISPDGGK SVNSFPNQAS FSQFFDGLDW MVQPPNYQDS NGIQSVSASE NIFSPSANIG
701: STINTDTLET FQNSCLSDCF PNSIQDFIGS PDLHSLTFLS PEMQNLDVHH DGSNVPSTSN SYVQMSFSEE DSGNHMESMQ RGMNNISSCS QPQTTEGFNL
801: GMYSKLPSLK ESQVLSLPEI HNSSRGTSSC SMDAAEYSIG RSAKPMKPPV RTYTKVQKLG SVGRSIDVTR YRDYRELRSA IASMFGLQGK LEHPASSDWK
901: LVYVDYENDV LLVGDDPWEE FINCVRCIRI LSPSEVQQMS ENGMQVLNDC IQADQ
001: MMASLSCVED KMKTSCLVNG GGTITTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
101: NLPSQLMCQV HNVTLHADKD SDEIYAQMSL QPVHSERDVF PVPDFGMLRG SKHPTEFFCK TLTASDTSTH GGFSVPRRAA EKLFPPLDYS AQPPTQELVV
201: RDLHENTWTF RHIYRGQPKR HLLTTGWSLF VGSKRLRAGD SVLFIRDEKS QLMVGVRRAN RQQTALPSSV LSADSMHIGV LAAAAHATAN RTPFLIFYNP
301: RACPAEFVIP LAKYRKAICG SQLSVGMRFG MMFETEDSGK RRYMGTIVGI SDLDPLRWPG SKWRNLQVEW DEPGCNDKPT RVSPWDIETP ESLFIFPSLT
401: SGLKRQLHPS YFAGETEWGS LIKRPLIRVP DSANGIMPYA SFPSMASEQL MKMMMRPHNN QNVPSFMSEM QQNIVMGNGG LLGDMKMQQP LMMNQKSEMV
501: QPQNKLTVNP SASNTSGQEQ NLSQSMSAPA KPENSTLSGC SSGRVQHGLE QSMEQASQVT TSTVCNEEKV NQLLQKPGAS SPVQADQCLD ITHQIYQPQS
601: DPINGFSFLE TDELTSQVSS FQSLAGSYKQ PFILSSQDSS AVVLPDSTNS PLFHDVWDTQ LNGLKFDQFS PLMQQDLYAS QNICMSNSTT SNILDPPLSN
701: TVLDDFCAIK DTDFQNHPSG CLVGNNNTSF AQDVQSQITS ASFADSQAFS RQDFPDNSGG TGTSSSNVDF DDCSLRQNSK GSSWQKIATP RVRTYTKVQK
801: TGSVGRSIDV TSFKDYEELK SAIECMFGLE GLLTHPQSSG WKLVYVDYES DVLLVGDDPW EEFVGCVRCI RILSPTEVQQ MSEEGMKLLN SAGINDLKTS
901: VS
Arabidopsis Description
ARF5Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.