Factsheet for TraesCS3D01G442000.7

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G125000.1
TraesCS1B01G142300.1
TraesCS1B01G361800.1
TraesCS1D01G129000.2
TraesCS3A01G136500.1
TraesCS3D01G137200.1
TraesCS4A01G365100.1
TraesCS5A01G259000.1
TraesCS5B01G230700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	TraesCS1A01G125000.1	AT4G18710.1	18599455
AT5G62000.1	TraesCS1B01G142300.1	AT4G18710.1	18599455
AT5G62000.1	TraesCS1B01G361800.1	AT4G18710.1	18599455
AT5G62000.1	TraesCS1D01G129000.2	AT4G18710.1	18599455
AT5G62000.1	TraesCS3A01G136500.1	AT4G18710.1	18599455
AT5G62000.1	TraesCS3D01G137200.1	AT4G18710.1	18599455
AT5G62000.1	TraesCS4A01G365100.1	AT4G18710.1	18599455
AT5G62000.1	TraesCS5A01G259000.1	AT4G18710.1	18599455
AT5G62000.1	TraesCS5B01G230700.1	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G449300.3	Wheat	nucleus	90.74	96.98
TraesCS3B01G486000.2	Wheat	nucleus	90.07	96.61
HORVU3Hr1G097200.10	Barley	nucleus	87.47	91.72
TraesCS3D01G434700.1	Wheat	nucleus	74.49	82.91
Os01t0927600-01	Rice	nucleus	72.8	79.83
KXG34038	Sorghum	nucleus	67.04	73.33
Zm00001d011953_P002	Maize	nucleus	66.25	72.83
Zm00001d042267_P003	Maize	nucleus	65.91	71.39
VIT_01s0244g00150.t01	Wine grape	nucleus	46.5	53.58
Solyc12g042070.1.1	Tomato	nucleus	48.65	52.05
PGSC0003DMT400037454	Potato	nucleus	48.31	51.63
Solyc03g118290.2.1	Tomato	nucleus	48.87	51.18
VIT_17s0000g00320.t01	Wine grape	nucleus	49.77	51.16
PGSC0003DMT400036765	Potato	nucleus	48.65	51.01
CDX87230	Canola	nucleus	47.07	50.36
KRH59742	Soybean	nucleus	48.76	50.35
KRH54110	Soybean	nucleus	47.74	50.18
KRH41062	Soybean	nucleus	48.08	50.06
KRH63855	Soybean	nucleus	47.4	49.82
AT5G62000.1	Thale cress	nucleus	48.08	49.59
Bra010048.1-P	Field mustard	nucleus	47.29	49.24
CDY00245	Canola	nucleus	47.29	49.24
CDX86939	Canola	nucleus	47.18	49.18
CDY67247	Canola	nucleus	47.07	49.0
CDY16798	Canola	nucleus	47.07	47.55
Bra035910.1-P	Field mustard	nucleus	47.07	46.96
TraesCS2D01G307600.1	Wheat	nucleus	34.54	46.79
TraesCS3D01G166700.1	Wheat	nucleus	30.36	35.49
TraesCS5D01G045700.2	Wheat	nucleus	29.23	28.78
TraesCS2D01G548900.1	Wheat	nucleus	26.86	28.57
TraesCS6D01G127600.2	Wheat	nucleus	29.68	28.37
TraesCS7D01G449900.2	Wheat	nucleus	28.89	28.19
TraesCS7D01G161900.1	Wheat	nucleus	29.68	24.69
TraesCS2D01G491200.2	Wheat	nucleus	26.07	24.19
TraesCS6D01G102300.1	Wheat	nucleus	29.46	23.12
TraesCS7D01G250100.4	Wheat	nucleus	28.22	22.89
TraesCS7D01G409700.1	Wheat	nucleus	29.12	21.96

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF8
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G442000	EnsemblPlants:TraesCS3D01G442000.7
TIGR:cd10017	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:-:551998802..552003241

Molecular Weight (calculated)

98821.6 Da

IEP (calculated)

6.817

GRAVY (calculated)

-0.557

Length

886 amino acids

Sequence
(BLAST)

001: MPPAAMPPPP PPPQGASTGD PLYDELWHAC AGPLVTVPRV GDMVYYFPQG HIEQVEASMN QVAANQMRLY DLPSKLLCRV LNVELKAEAD TDEVYAQVML
101: MPEPEQSETT TEKSSPATGG ATPARPAVRS FCKTLTASDT STHGGFSVLR RHADECLPPL DMTQSPPTQE LVAKDLHGME WRFRHIFRGQ PRRHLLQSGW
201: SVFVSSKRLV AGDAFIFLRG ESGELRVGVR RAMRQLSNIA SSVISSHSMH LGVLATAWHA INTKTMFTVY YKPRTSRSEF IIPYDKYMES VKNIYSIGTR
301: FKMRFEGEEA PEQRFTGTIV GSDNLDQLWP ESSWRSLKVR WDESSTIPRP DRVSPWEIEP ASSPPVNPLP ISRPKRSRPN VPPASPESSV RTKEGATKAD
401: MDCAQAQRNQ NNTALPGQEQ RSNKLTDIND FDASVQKPMM WSPPPPPNIG KNNPLTFQQR PSVHNSFQLG RRETDFKDAS SGAQPFGDSL GFFMQTTFDE
501: APNRLSSFKN QFQDHSYARQ YADPYLFMHQ QPSLTVESSR KMHTENNEMH FWNGPSTAYS NSRDQAQDFR FTEHPSNWLS PQFSRAEQPR VIRPHASIAP
601: IELEKTTEGS DFKIFGFKVD TASAGFNHLN SPMAGTHEPV LQTQPSVSLD HLQTDCSPEV SLSIAGTTEN EKNMQQCPQS SKDVQSKSHG ASTRSCTKVH
701: KQGVALGRSV DLSKFVDYDE LTAELDKMFE FDGELLSSNK NWQIVYTDNE GDMMLVGDDP WEEFCSIVRK ICIYTKEEVQ KMNSKPSGPK KEEGSVDGDG
801: ATEKAHLPAS SDLNSSQLGM CFLKPHAIGQ VHTVFGAFNP PIYLNRLAAS MVCMILLFAI TSITRRKRLT VQMLALAVSA GCVKAD

Best Arabidopsis Sequence Match ( AT5G62000.1 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.