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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX78886
CDX99437
CDY34051
CDY36527
CDY39608
CDY62551
CDY64921
CDY69647
CDY70859

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G62000.1 CDY36527 AT1G15050.1 21734647
AT5G62000.1 CDY39608 AT1G15050.1 21734647
AT5G62000.1 CDX78886 AT4G18710.1 18599455
AT5G62000.1 CDX99437 AT4G18710.1 18599455
AT5G62000.1 CDY34051 AT4G18710.1 18599455
AT5G62000.1 CDY62551 AT4G18710.1 18599455
AT5G62000.1 CDY64921 AT4G18710.1 18599455
AT5G62000.1 CDY69647 AT4G18710.1 18599455
AT5G62000.1 CDY70859 AT4G18710.1 18599455
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY16798 Canola nucleus 95.89 90.54
CDY67247 Canola nucleus 87.56 85.19
AT5G62000.1 Thale cress nucleus 87.44 84.28
CDX86939 Canola nucleus 86.35 84.12
CDY00245 Canola nucleus 86.11 83.78
Os11t0523800-01 Rice nucleus 32.13 72.68
VIT_17s0000g00320.t01 Wine grape nucleus 67.63 64.97
KRH63855 Soybean nucleus 64.49 63.35
PGSC0003DMT400037454 Potato nucleus 63.16 63.09
KRH54110 Soybean nucleus 64.13 62.99
Solyc12g042070.1.1 Tomato nucleus 62.8 62.8
KRH41062 Soybean nucleus 64.25 62.51
KRH59742 Soybean nucleus 64.01 61.77
Solyc03g118290.2.1 Tomato nucleus 62.2 60.87
PGSC0003DMT400036765 Potato nucleus 62.08 60.83
GSMUA_Achr6P08090_001 Banana nucleus 56.28 56.55
GSMUA_Achr10P... Banana nucleus 54.59 54.85
TraesCS3A01G442000.1 Wheat nucleus 52.05 54.08
TraesCS3D01G434700.1 Wheat nucleus 51.93 54.02
TraesCS3B01G475800.1 Wheat nucleus 51.57 53.64
KXG34038 Sorghum nucleus 52.05 53.21
CDY27291 Canola nucleus 39.61 52.99
Zm00001d011953_P002 Maize nucleus 51.57 52.98
GSMUA_Achr6P16450_001 Banana nucleus 55.8 52.92
Os01t0927600-01 Rice nucleus 51.45 52.72
OQU83539 Sorghum nucleus 51.69 52.52
CDX80025 Canola nucleus 36.96 52.4
Zm00001d042267_P003 Maize nucleus 51.57 52.2
CDY47607 Canola nucleus 38.04 52.15
CDX95705 Canola nucleus 33.82 51.38
GSMUA_AchrUn_... Banana nucleus 54.35 50.91
CDY10978 Canola nucleus 38.28 50.72
Os12t0479400-02 Rice nucleus 51.45 50.65
TraesCS3B01G486000.2 Wheat nucleus 50.36 50.48
TraesCS3A01G449300.3 Wheat nucleus 50.36 50.3
CDY50434 Canola nucleus 37.8 50.08
CDY33603 Canola nucleus 39.98 50.08
CDY65065 Canola nucleus 39.98 50.08
CDY03502 Canola nucleus 35.63 49.17
HORVU3Hr1G097200.10 Barley nucleus 50.0 48.99
HORVU3Hr1G096410.4 Barley nucleus, plastid 46.98 48.38
EES17013 Sorghum nucleus 48.79 48.15
Zm00001d049295_P001 Maize nucleus 50.36 47.6
Zm00001d023659_P007 Maize nucleus 47.34 47.46
TraesCS3D01G442000.7 Wheat nucleus 50.36 47.07
HORVU3Hr1G096510.3 Barley plastid 46.98 46.64
Zm00001d041056_P019 Maize nucleus 47.46 46.56
CDY67714 Canola nucleus 25.97 40.49
CDX94748 Canola endoplasmic reticulum, vacuole 18.0 40.27
CDY69758 Canola nucleus 20.05 39.9
CDY48583 Canola nucleus 26.09 39.49
CDY21993 Canola nucleus 25.97 39.45
CDY53570 Canola nucleus 23.79 39.32
CDY41720 Canola nucleus 25.48 38.36
CDX94777 Canola nucleus 25.72 38.24
CDY49005 Canola nucleus 25.72 38.24
CDY36940 Canola nucleus 25.12 37.55
CDY55738 Canola nucleus 23.91 36.67
CDY54111 Canola nucleus 25.0 36.51
CDY24168 Canola nucleus 24.64 36.23
CDY31545 Canola nucleus 31.88 34.87
CDX80168 Canola nucleus 31.4 34.26
CDY39274 Canola nucleus 30.8 32.73
CDY07460 Canola nucleus 30.8 32.65
CDY12048 Canola nucleus 32.85 32.11
CDX90245 Canola nucleus 32.73 31.81
CDY53537 Canola nucleus 31.16 31.7
CDX74594 Canola nucleus 31.16 31.5
CDY02285 Canola nucleus 32.73 31.04
CDY09598 Canola nucleus 32.49 30.92
CDX94484 Canola nucleus 22.71 30.03
CDY62586 Canola nucleus 28.74 28.13
CDX83741 Canola nucleus 28.74 28.13
CDY01393 Canola nucleus 29.35 28.09
CDY61164 Canola nucleus 28.99 27.87
CDY29392 Canola nucleus 29.35 27.74
CDY39348 Canola nucleus 29.23 27.53
CDX94528 Canola nucleus 22.22 27.5
CDX83778 Canola nucleus 31.28 25.39
CDY26690 Canola nucleus 32.13 25.36
CDX96672 Canola nucleus 31.16 25.29
CDY41030 Canola nucleus 31.76 24.86
CDX92437 Canola nucleus 30.68 24.42
CDY24162 Canola nucleus 18.84 24.0
CDY16560 Canola nucleus 30.19 23.99
CDY45069 Canola nucleus 31.04 23.09
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90GO:A0A078DDD5InterPro:AUX/IAA_dom
InterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlants:CDX87230ProteinID:CDX87230ProteinID:CDX87230.1InterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006355GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009725
GO:GO:0009734GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00146165001InterPro:IPR000270InterPro:IPR003340InterPro:IPR015300
InterPro:PB1_domPFAM:PF02309PFAM:PF02362PFAM:PF06507PFscan:PS50863PFscan:PS51745
PANTHER:PTHR31384PANTHER:PTHR31384:SF8SMART:SM01019SUPFAM:SSF101936SUPFAM:SSF54277UniParc:UPI0004EEC5F1
SEG:seg:::::
Description
BnaC09g05450D
Coordinates
chrLK031849:+:1306040..1310221
Molecular Weight (calculated)
92429.3 Da
IEP (calculated)
6.756
GRAVY (calculated)
-0.647
Length
828 amino acids
Sequence
(BLAST)
001: MTSSEAINVA VSGEGQKGHS NRVVDAEAAL YRELWHACAG PLVTVPRQDD RVFYFPQGHI EQVEASTNQA AEQQMPLYDL PSKILCRVIN VDLKAEVDTD
101: EVYAQITLLP EAIQDENAIE KEAPPPPPPR FQVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSRQ PPTQELVAKD LHANEWRFRH IFRGQPRRHL
201: LQSGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRAMRQ QGNVSSSVIS SHSMHLGVLA TAWHAISTGT MFSVYYKPRT SPSEFIVPFD QYMESVKNNY
301: SIGMRFKMRF EGEEAPEQRF TGTIVGIEDS DPTRWAKSKW RSLKVRWDET SSIPRPDRVS PWKLEPALAP PALSPVTMPR PKRPRSNIAP SSHDSSMLIR
401: EGSAMGNKDP LPASGFSRVL QGQEHPTLRT KHTETVECDA PESSVVWQSS ADDDKVDVVS ASRRYENWMS SGRHESAYTD LLSGFGANVD PSPGHQIPFY
501: DHSSLPSVAA NKFIGDRDGK FDYFANQWQM MHSGLSLTLH EFPKIPAASD TSFQGRGNAK YGEYPVLHSL TTENAGGNWP IRPRAVNYFE EAVQAHAQAQ
601: AREHVTKRPE MVEETAKSRD GNCRLFGIPL VNNVNGTDST MSPRNNFNDT AGLTQMTSPK VQDLSDQSKG SKSTNDQREQ GRPFQANHPH PKDVHTKTHS
701: SRSCTKVQKQ GIALGRSVDL SKFQNYKELI AELDRMFEFN GELMAPKKDW LIVYTDDEND MMLVGDDPWQ EFCGMVRKIS IYTKEEVRKM NPGTLGCRSE
801: EEAVVGEGSD PKDAKSASNP SLSSAGHS
Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)
001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
Arabidopsis Description
ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.