Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d008893_P001 | |
| Zm00001d039407_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62000.1 | Zm00001d008893_P001 | AT4G18710.1 | 18599455 |
| AT5G62000.1 | Zm00001d039407_P001 | AT4G18710.1 | 18599455 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU83539 | Sorghum | nucleus | 83.68 | 89.94 |
| Os11t0523800-01 | Rice | nucleus | 35.27 | 84.43 |
| GSMUA_Achr6P08090_001 | Banana | nucleus | 55.71 | 59.22 |
| Zm00001d023659_P007 | Maize | nucleus | 55.59 | 58.96 |
| Zm00001d041056_P019 | Maize | nucleus | 56.39 | 58.53 |
| GSMUA_Achr10P... | Banana | nucleus | 54.11 | 57.52 |
| VIT_01s0244g00150.t01 | Wine grape | nucleus | 49.43 | 56.31 |
| GSMUA_Achr6P16450_001 | Banana | nucleus | 54.68 | 54.87 |
| VIT_17s0000g00320.t01 | Wine grape | nucleus | 53.2 | 54.06 |
| Solyc12g042070.1.1 | Tomato | nucleus | 50.34 | 53.26 |
| PGSC0003DMT400037454 | Potato | nucleus | 50.11 | 52.96 |
| KRH41062 | Soybean | nucleus | 51.37 | 52.88 |
| KRH59742 | Soybean | nucleus | 51.71 | 52.8 |
| PGSC0003DMT400036765 | Potato | nucleus | 50.91 | 52.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.97 | 52.49 |
| KRH54110 | Soybean | nucleus | 50.46 | 52.43 |
| Solyc03g118290.2.1 | Tomato | nucleus | 50.46 | 52.25 |
| KRH63855 | Soybean | nucleus | 50.0 | 51.96 |
| Zm00001d011953_P002 | Maize | nucleus | 47.37 | 51.49 |
| Zm00001d042267_P003 | Maize | nucleus | 47.83 | 51.22 |
| CDX86939 | Canola | nucleus | 48.97 | 50.47 |
| CDX87230 | Canola | nucleus | 47.6 | 50.36 |
| Bra010048.1-P | Field mustard | nucleus | 48.86 | 50.29 |
| CDY67247 | Canola | nucleus | 48.86 | 50.29 |
| CDY00245 | Canola | nucleus | 48.86 | 50.29 |
| AT5G62000.1 | Thale cress | nucleus | 49.32 | 50.29 |
| Zm00001d050781_P001 | Maize | nucleus | 35.96 | 50.0 |
| CDY16798 | Canola | nucleus | 47.72 | 47.66 |
| Bra035910.1-P | Field mustard | nucleus | 47.95 | 47.3 |
| Zm00001d016838_P001 | Maize | nucleus | 36.76 | 45.8 |
| Zm00001d003601_P006 | Maize | nucleus | 35.62 | 45.75 |
| Zm00001d039267_P005 | Maize | nucleus | 27.51 | 34.83 |
| Zm00001d001879_P036 | Maize | nucleus | 27.4 | 29.38 |
| Zm00001d031064_P003 | Maize | nucleus | 28.42 | 27.76 |
| Zm00001d053819_P002 | Maize | nucleus | 29.11 | 27.75 |
| Zm00001d041497_P005 | Maize | nucleus | 28.08 | 27.7 |
| Zm00001d014377_P002 | Maize | nucleus | 28.88 | 27.59 |
| Zm00001d001945_P002 | Maize | nucleus | 29.11 | 26.9 |
| Zm00001d036593_P001 | Maize | plastid | 28.54 | 26.04 |
| Zm00001d026540_P002 | Maize | nucleus | 28.31 | 25.86 |
| Zm00001d026590_P003 | Maize | nucleus | 24.89 | 25.71 |
| Zm00001d045026_P002 | Maize | nucleus | 27.97 | 23.27 |
| Zm00001d031522_P007 | Maize | nucleus | 27.97 | 22.56 |
| Zm00001d014690_P014 | Maize | nucleus | 29.34 | 21.52 |
| Zm00001d015243_P001 | Maize | nucleus | 25.91 | 20.79 |
| Zm00001d052637_P001 | Maize | mitochondrion | 1.26 | 13.41 |
Protein Annotations
| EntrezGene:100274564 | MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | UniProt:A0A1D6PTP1 |
| ProteinID:AQK50002.1 | InterPro:AUX/IAA_dom | InterPro:Auxin_resp | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 |
| GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 | InterPro:PB1_dom |
| PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 | PANTHER:PTHR31384 |
| PANTHER:PTHR31384:SF40 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI000842FC41 | EnsemblPlantsGene:Zm00001d049295 |
| EnsemblPlants:Zm00001d049295_P001 | EnsemblPlants:Zm00001d049295_T001 | SEG:seg | : | : | : |
Description
ARF-transcription factor 13Auxin response factor 2
Coordinates
chr4:-:24981833..24987633
Molecular Weight (calculated)
95989.4 Da
IEP (calculated)
7.029
GRAVY (calculated)
-0.517
Length
876 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSAAAAAA AAQVAGGGGG GEGDAAAAAR GGGGTEDGMY TELWNLCAGP LVTVPRVGDK VYYFPQGHIE QVEASTNQVA EQHMQFYDLP WKILCEVMNV
101: ELKAEPDNDE VYAQLTLLPE SKQPEENGSS EEMPASPPAA LARPRVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TRQPPTQELV AKDLHGVEWR
201: FRHIFRGQPR RHLLQSGWSV FVSAKRLVAG DAFIFLRGDS GELRVGVRRA MRQQANVPSS VISSHSMHLG VLATAWHAVN TGTMFTVYYK PRTSPAEFVV
301: PCDRYMESLK RNYPIGMRFK MRFEGEEAPE QRFTGTIVGN VDPDQAGWAE SKWRYLKVRW DEASSIPRPE RVSPWQIEPA VSPPPINPLP VHRPKRPRSN
401: AVASLPESSA PTKEGLTSSC VQNLVGCMVI LLMHVFYPIL AAPKVTLETQ QHALQRPLQT QDNVAPKSVF GDNSELDSAH KSSLRPSGFD LDKSTIGMQR
501: KLGSDIWMRM NRPDGYSEML SGYQPPNEGA RNSQGFCSLP DQIAAGRPNF WHTVNAHYQD QQGNHNLFPG SWSMMPSSTG FGMNRQSYPM IQEVGGMSQS
601: CTNTKFGNGV YAALPGRGID RYPSGWFGHT TPGGRVDDAQ PRVIKPQPLV LAHGEALKMK GNSCKLFGIH LDSPAKSEPL KSPPSVATPA AEKWMADGID
701: ADKSPEPHKT PKQLGATQVD PVPERCPQAS RGTQCKSQGG STRSCKKVHK QGMALGRSVD LTKFNGYTEL VAELDEMFDF NGELKGCSKE WMVVYTDYEG
801: DMMLVGDDPW NEFCSMVHKI FVYTREEVQR MNPGALNSRP EDSGLANSTE RGSASTAAAR EAPGYQSASS LNSDNC
101: ELKAEPDNDE VYAQLTLLPE SKQPEENGSS EEMPASPPAA LARPRVHSFC KTLTASDTST HGGFSVLRRH ADECLPPLDM TRQPPTQELV AKDLHGVEWR
201: FRHIFRGQPR RHLLQSGWSV FVSAKRLVAG DAFIFLRGDS GELRVGVRRA MRQQANVPSS VISSHSMHLG VLATAWHAVN TGTMFTVYYK PRTSPAEFVV
301: PCDRYMESLK RNYPIGMRFK MRFEGEEAPE QRFTGTIVGN VDPDQAGWAE SKWRYLKVRW DEASSIPRPE RVSPWQIEPA VSPPPINPLP VHRPKRPRSN
401: AVASLPESSA PTKEGLTSSC VQNLVGCMVI LLMHVFYPIL AAPKVTLETQ QHALQRPLQT QDNVAPKSVF GDNSELDSAH KSSLRPSGFD LDKSTIGMQR
501: KLGSDIWMRM NRPDGYSEML SGYQPPNEGA RNSQGFCSLP DQIAAGRPNF WHTVNAHYQD QQGNHNLFPG SWSMMPSSTG FGMNRQSYPM IQEVGGMSQS
601: CTNTKFGNGV YAALPGRGID RYPSGWFGHT TPGGRVDDAQ PRVIKPQPLV LAHGEALKMK GNSCKLFGIH LDSPAKSEPL KSPPSVATPA AEKWMADGID
701: ADKSPEPHKT PKQLGATQVD PVPERCPQAS RGTQCKSQGG STRSCKKVHK QGMALGRSVD LTKFNGYTEL VAELDEMFDF NGELKGCSKE WMVVYTDYEG
801: DMMLVGDDPW NEFCSMVHKI FVYTREEVQR MNPGALNSRP EDSGLANSTE RGSASTAAAR EAPGYQSASS LNSDNC
001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
Arabidopsis Description
ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.