Factsheet for Bra010048.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012581.1-P
Bra013341.1-P
Bra020994.1-P
Bra026166.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	Bra026166.1-P	AT1G15050.1	21734647
AT5G62000.1	Bra012581.1-P	AT4G18710.1	18599455
AT5G62000.1	Bra013341.1-P	AT4G18710.1	18599455
AT5G62000.1	Bra020994.1-P	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00245	Canola	nucleus	99.88	99.88
CDX86939	Canola	nucleus	96.94	97.06
AT5G62000.1	Thale cress	nucleus	87.9	87.08
Bra035910.1-P	Field mustard	nucleus	84.25	80.74
Os11t0523800-01	Rice	nucleus	31.96	74.32
VIT_17s0000g00320.t01	Wine grape	nucleus	67.8	66.94
KRH54110	Soybean	nucleus	63.81	64.41
KRH63855	Soybean	nucleus	63.81	64.41
KRH41062	Soybean	nucleus	64.28	64.28
KRH59742	Soybean	nucleus	64.28	63.75
PGSC0003DMT400037454	Potato	nucleus	62.04	63.69
Solyc12g042070.1.1	Tomato	nucleus	61.81	63.53
Solyc03g118290.2.1	Tomato	nucleus	61.93	62.29
PGSC0003DMT400036765	Potato	nucleus	61.81	62.25
GSMUA_Achr6P08090_001	Banana	nucleus	56.05	57.89
GSMUA_Achr10P...	Banana	nucleus	54.17	55.95
TraesCS3D01G434700.1	Wheat	nucleus	50.76	54.27
TraesCS3A01G442000.1	Wheat	nucleus	50.76	54.2
TraesCS3B01G475800.1	Wheat	nucleus	50.53	54.02
GSMUA_Achr6P16450_001	Banana	nucleus	55.35	53.95
Bra014419.1-P	Field mustard	nucleus	35.02	53.69
KXG34038	Sorghum	nucleus	50.65	53.21
Zm00001d011953_P002	Maize	nucleus	50.18	52.98
Os01t0927600-01	Rice	nucleus	50.29	52.97
Bra004530.1-P	Field mustard	nucleus	36.31	52.91
OQU83539	Sorghum	nucleus	50.18	52.39
GSMUA_AchrUn_...	Banana	nucleus	54.41	52.38
Zm00001d042267_P003	Maize	nucleus	49.94	51.96
Bra013748.1-P	Field mustard	nucleus	36.66	51.83
Os12t0479400-02	Rice	nucleus	50.41	51.01
TraesCS3B01G486000.2	Wheat	nucleus	49.35	50.85
Bra019255.1-P	Field mustard	nucleus	37.13	50.72
Bra035427.1-P	Field mustard	nucleus	39.6	50.68
TraesCS3A01G449300.3	Wheat	nucleus	49.35	50.66
HORVU3Hr1G097200.10	Barley	nucleus	49.12	49.47
Zm00001d049295_P001	Maize	nucleus	50.29	48.86
EES17013	Sorghum	nucleus	47.94	48.63
Zm00001d023659_P007	Maize	nucleus	47.0	48.43
HORVU3Hr1G096410.4	Barley	nucleus, plastid	45.71	48.38
TraesCS3D01G442000.7	Wheat	nucleus	49.24	47.29
Zm00001d041056_P019	Maize	nucleus	46.77	47.16
HORVU3Hr1G096510.3	Barley	plastid	46.06	47.0
Bra025775.1-P	Field mustard	nucleus	25.03	45.32
Bra034234.1-P	Field mustard	nucleus	25.62	40.3
Bra027944.1-P	Field mustard	nucleus	25.5	39.53
Bra017362.1-P	Field mustard	nucleus	24.21	38.15
Bra018124.1-P	Field mustard	nucleus	24.79	38.02
Bra002479.1-P	Field mustard	nucleus	32.31	36.28
Bra004125.1-P	Field mustard	nucleus	30.55	33.33
Bra010776.1-P	Field mustard	nucleus	31.61	32.33
Bra028110.1-P	Field mustard	nucleus	30.67	30.92
Bra016492.1-P	Field mustard	nucleus	28.79	29.31
Bra012190.1-P	Field mustard	nucleus	29.38	28.84
Bra007632.1-P	Field mustard	nucleus	35.14	28.34
Bra025720.1-P	Field mustard	nucleus	32.2	26.12
Bra016517.1-P	Field mustard	nucleus	30.9	26.04
Bra020125.1-P	Field mustard	nucleus	31.49	24.36
Bra002327.1-P	Field mustard	nucleus	31.26	18.49

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01294	ProteinID:AFD01294.1
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra010048	EnsemblPlants:Bra010048.1	EnsemblPlants:Bra010048.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	UniProt:H9B4C1	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	EMBL:JN979460	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF8	SMART:SM01019
SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002535788	SEG:seg	:	:

Description

AT5G62000 (E=0.0) ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor

Coordinates

chrA06:+:18868174..18871892

Molecular Weight (calculated)

94615.0 Da

IEP (calculated)

6.792

GRAVY (calculated)

-0.649

Length

851 amino acids

Sequence
(BLAST)

001: MASSDVSMKG NRGGGENFSS LGYSGPTGAA GESLKTQSNR SVAAERVVDP DAALYRELWH ACAGPLVTVP RQDDRVFYFP QGHIEQVEAS TNQAAEQQMP
101: LYDLPSKILC RVINVDLKAE ADTDEVYAQI TLLPEPVQDE NAIEKESPPP PPPRFQVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL
201: VAKDLHASEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQQGNVPS SVISSHSMHL GVLATAWHAI STGTMFTVYY
301: KPRTSPSEFI VPFDQYMESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIVG IEDSDPTRWA KSKWRSLKVR WDETTSIPRP DRVSPWKIEP ALSPPALSPV
401: PMPRPKRPRS NLAPSTPDSS MRIREGSSKA NMDPLPASGL SRVLQGQEYP TLRTKHVESG ECDAPENSVV WQSSADDDKV DVVSASRRYE NWISSGRHGP
501: TCTDLLSGFG TNIEPPHGHQ IPFYDRLSSS SPSVAARKIL SDQDGKFEYL ANQWQMMHSG LSLKLHESPK VPAASDASFQ GIGNPNYGEY ALPRAVTTEN
601: AAGNWPIRPR ALNYFEEAVH AQTREHVTKR PAVVEEEAAK PRDGNCRLFG IPLVNNVNGT DTTLSQRNNL NDCTGPTQIA SPKVQDLSDQ SKGSKSTNDH
701: REQGRPFPVN KPHPKDVQTK TNSCRSCTKV QKQGIALGRS VDLSKFQNYE ELVTELDRLF EFNGELMAPK KDWLIVYTDD ENDMMLVGDD PWQEFCCMVR
801: KIFIYTKEEV RKMNPGTLSC RNEEEPVVGE GSDAKDAKSA SNPSLSSAGN S

Best Arabidopsis Sequence Match ( AT5G62000.2 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.