Factsheet for HORVU3Hr1G096410.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G051860.1
HORVU3Hr1G026020.3
HORVU6Hr1G008360.2
HORVU6Hr1G046490.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62000.1	HORVU2Hr1G051860.1	AT4G18710.1	18599455
AT5G62000.1	HORVU3Hr1G026020.3	AT4G18710.1	18599455
AT5G62000.1	HORVU6Hr1G008360.2	AT4G18710.1	18599455
AT5G62000.1	HORVU6Hr1G046490.1	AT4G18710.1	18599455

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G096510.3	Barley	plastid	99.75	96.16
TraesCS3D01G434700.1	Wheat	nucleus	89.18	90.08
TraesCS3A01G442000.1	Wheat	nucleus	89.05	89.84
TraesCS3B01G475800.1	Wheat	nucleus	88.93	89.82
Os01t0927600-01	Rice	nucleus	75.5	75.12
HORVU3Hr1G097200.10	Barley	nucleus	75.5	71.83
KXG34038	Sorghum	nucleus	71.27	70.74
Zm00001d011953_P002	Maize	nucleus	70.02	69.85
Zm00001d042267_P003	Maize	nucleus	69.9	68.7
VIT_01s0244g00150.t01	Wine grape	nucleus	47.01	49.15
Solyc12g042070.1.1	Tomato	nucleus	49.63	48.19
PGSC0003DMT400037454	Potato	nucleus	49.5	48.01
KRH59742	Soybean	nucleus	50.87	47.67
Solyc03g118290.2.1	Tomato	nucleus	50.0	47.52
PGSC0003DMT400036765	Potato	nucleus	49.88	47.46
KRH41062	Soybean	nucleus	50.0	47.24
VIT_17s0000g00320.t01	Wine grape	nucleus	50.62	47.22
CDX87230	Canola	nucleus	48.38	46.98
KRH63855	Soybean	nucleus	49.25	46.98
KRH54110	Soybean	nucleus	49.13	46.86
AT5G62000.1	Thale cress	nucleus	50.0	46.8
CDY67247	Canola	nucleus	48.76	46.06
Bra010048.1-P	Field mustard	nucleus	48.38	45.71
CDY00245	Canola	nucleus	48.38	45.71
CDX86939	Canola	nucleus	48.01	45.41
Bra035910.1-P	Field mustard	nucleus	48.88	44.26
CDY16798	Canola	nucleus	48.26	44.24
HORVU2Hr1G076920.3	Barley	nucleus	34.45	41.47
HORVU3Hr1G032230.6	Barley	nucleus, plastid	31.09	31.25
HORVU2Hr1G121110.32	Barley	nucleus	27.61	26.49
HORVU5Hr1G009650.20	Barley	nucleus	29.35	26.49
HORVU6Hr1G026730.9	Barley	nucleus	29.35	25.4
HORVU7Hr1G106280.1	Barley	nucleus	29.48	25.27
HORVU2Hr1G109650.18	Barley	nucleus	26.99	22.68
HORVU7Hr1G033820.5	Barley	nucleus	29.6	22.33
HORVU7Hr1G051930.4	Barley	nucleus	29.23	21.7
HORVU6Hr1G020330.30	Barley	nucleus	29.73	20.95
HORVU7Hr1G096460.7	Barley	mitochondrion, nucleus, vacuole	29.85	19.97

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	UniProt:A0A287MES2	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
EnsemblPlantsGene:HORVU3Hr1G096410	EnsemblPlants:HORVU3Hr1G096410.4	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom
PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF8	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000B479D06	SEG:seg

Description

Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A287MES2]

Coordinates

chrchr3H:+:653186235..653190119

Molecular Weight (calculated)

89945.5 Da

IEP (calculated)

9.079

GRAVY (calculated)

-0.726

Length

804 amino acids

Sequence
(BLAST)

001: TPPRRFLTLT GAGFPSRGSA LRRALARLRR PARHRPARRG PRLLLPAGAH RAGRGLHEPG RRQPDAPLRS AAQAALPGHQ RRAQGAEADT DEVYAQVMLM
101: PEPEQNEMAV DKSTSTTGAT PPRPAVRSFC KTLTASDTST HGGFSVLRRH ADECLPSLDM TQSPPTQELV AKDLHGMDWR FRHIFRGQPR RHLLQSGWSV
201: FVSSKRLVAG DAFIFLRGES GELRVGVRRA MRQLSNVPSS VISSHSMHLG VLATAWHAIN TKSMFTVYYK PRTSPSEFII PYDQYMESVK NNYSIGMRFR
301: MRFEGEEAPE QRFTGTIVGS ENLDQLWPES NWRSLKVRWD EPSTIPRPDR VSPWKIEPAS SPPVNPLPLS RVKRPRPNVP PVSPESSVLT KEGATKIDMD
401: SAQAQQRNQN NMVLQGQEHM TLRTNNLTGS NDSDATVQKP MMWSPSPNIG KNHASAFQQR PSMENWMQLG RCETAFKDAS SGAQSFGDSQ GFFMQTFDEA
501: PNRHGSFKNQ FQDHSSARHF SDPYTKMHTE ANEFHFWNSQ STVYGNPRDQ SQGFRFEEHP SNWLRQQQFS PVEQPRVIRP QASIAPVDLE KAREGSGFKI
601: FGFKVDTTSA PSNHLSSTMA VIHEPVLQTQ ASASLTQLQH AHIDCIPELS VSTAGTTENE KSIQQAPNSS KDVQSKSHGA STRSCTKVHK QGVALGRSVD
701: LSKFGDYDEL TAELDRMFEF DGELMSSNRD WQIVYTDPEG DMMLVGDDPW EEFCSIVRKI FIYTKEEVQK MNSKSSTPRK EEGSADADGA NEKAHLAASS
801: HLDN

Best Arabidopsis Sequence Match ( AT5G62000.1 )
(BLAST)

001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS

Arabidopsis Description

ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.