Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010048.1-P | Field mustard | nucleus | 99.88 | 99.88 |
| CDX86939 | Canola | nucleus | 96.83 | 96.94 |
| AT5G62000.1 | Thale cress | nucleus | 87.78 | 86.96 |
| CDX87230 | Canola | nucleus | 83.78 | 86.11 |
| CDY67247 | Canola | nucleus | 84.25 | 84.25 |
| CDY16798 | Canola | nucleus | 83.31 | 80.84 |
| Os11t0523800-01 | Rice | nucleus | 31.96 | 74.32 |
| VIT_17s0000g00320.t01 | Wine grape | nucleus | 67.8 | 66.94 |
| KRH63855 | Soybean | nucleus | 63.81 | 64.41 |
| KRH54110 | Soybean | nucleus | 63.81 | 64.41 |
| KRH41062 | Soybean | nucleus | 64.28 | 64.28 |
| KRH59742 | Soybean | nucleus | 64.28 | 63.75 |
| PGSC0003DMT400037454 | Potato | nucleus | 62.04 | 63.69 |
| Solyc12g042070.1.1 | Tomato | nucleus | 61.81 | 63.53 |
| Solyc03g118290.2.1 | Tomato | nucleus | 61.93 | 62.29 |
| PGSC0003DMT400036765 | Potato | nucleus | 61.81 | 62.25 |
| GSMUA_Achr6P08090_001 | Banana | nucleus | 56.05 | 57.89 |
| GSMUA_Achr10P... | Banana | nucleus | 54.17 | 55.95 |
| TraesCS3D01G434700.1 | Wheat | nucleus | 50.76 | 54.27 |
| TraesCS3A01G442000.1 | Wheat | nucleus | 50.76 | 54.2 |
| CDY27291 | Canola | nucleus | 39.37 | 54.12 |
| TraesCS3B01G475800.1 | Wheat | nucleus | 50.53 | 54.02 |
| GSMUA_Achr6P16450_001 | Banana | nucleus | 55.35 | 53.95 |
| KXG34038 | Sorghum | nucleus | 50.65 | 53.21 |
| Zm00001d011953_P002 | Maize | nucleus | 50.18 | 52.98 |
| Os01t0927600-01 | Rice | nucleus | 50.29 | 52.97 |
| CDX80025 | Canola | nucleus | 36.08 | 52.57 |
| CDY47607 | Canola | nucleus | 37.25 | 52.48 |
| OQU83539 | Sorghum | nucleus | 50.18 | 52.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.41 | 52.38 |
| Zm00001d042267_P003 | Maize | nucleus | 49.94 | 51.96 |
| CDX95705 | Canola | nucleus | 32.9 | 51.38 |
| CDY10978 | Canola | nucleus | 37.49 | 51.04 |
| Os12t0479400-02 | Rice | nucleus | 50.41 | 51.01 |
| TraesCS3B01G486000.2 | Wheat | nucleus | 49.35 | 50.85 |
| CDY50434 | Canola | nucleus | 37.25 | 50.72 |
| CDY33603 | Canola | nucleus | 39.37 | 50.68 |
| CDY65065 | Canola | nucleus | 39.37 | 50.68 |
| TraesCS3A01G449300.3 | Wheat | nucleus | 49.35 | 50.66 |
| CDY03502 | Canola | nucleus | 34.9 | 49.5 |
| HORVU3Hr1G097200.10 | Barley | nucleus | 49.12 | 49.47 |
| Zm00001d049295_P001 | Maize | nucleus | 50.29 | 48.86 |
| EES17013 | Sorghum | nucleus | 47.94 | 48.63 |
| Zm00001d023659_P007 | Maize | nucleus | 47.0 | 48.43 |
| HORVU3Hr1G096410.4 | Barley | nucleus, plastid | 45.71 | 48.38 |
| TraesCS3D01G442000.7 | Wheat | nucleus | 49.24 | 47.29 |
| Zm00001d041056_P019 | Maize | nucleus | 46.77 | 47.16 |
| HORVU3Hr1G096510.3 | Barley | plastid | 46.06 | 47.0 |
| CDY67714 | Canola | nucleus | 25.62 | 41.05 |
| CDX94748 | Canola | endoplasmic reticulum, vacuole | 17.63 | 40.54 |
| CDY21993 | Canola | nucleus | 25.73 | 40.18 |
| CDY69758 | Canola | nucleus | 19.62 | 40.14 |
| CDY48583 | Canola | nucleus | 25.73 | 40.04 |
| CDY53570 | Canola | nucleus | 23.5 | 39.92 |
| CDY41720 | Canola | nucleus | 25.5 | 39.45 |
| CDX94777 | Canola | nucleus | 25.73 | 39.32 |
| CDY49005 | Canola | nucleus | 25.62 | 39.14 |
| CDY36940 | Canola | nucleus | 25.15 | 38.63 |
| CDY55738 | Canola | nucleus | 23.97 | 37.78 |
| CDY54111 | Canola | nucleus | 25.03 | 37.57 |
| CDY24168 | Canola | nucleus | 24.79 | 37.48 |
| CDY31545 | Canola | nucleus | 32.2 | 36.2 |
| CDX80168 | Canola | nucleus | 31.84 | 35.7 |
| CDY39274 | Canola | nucleus | 30.55 | 33.38 |
| CDY07460 | Canola | nucleus | 30.43 | 33.16 |
| CDY12048 | Canola | nucleus | 32.78 | 32.94 |
| CDX90245 | Canola | nucleus | 32.67 | 32.63 |
| CDY53537 | Canola | nucleus | 30.67 | 32.06 |
| CDX74594 | Canola | nucleus | 30.67 | 31.87 |
| CDY02285 | Canola | nucleus | 32.67 | 31.84 |
| CDY09598 | Canola | nucleus | 32.43 | 31.72 |
| CDX94484 | Canola | nucleus | 22.68 | 30.83 |
| CDY62586 | Canola | nucleus | 29.02 | 29.2 |
| CDX83741 | Canola | nucleus | 29.02 | 29.2 |
| CDY61164 | Canola | nucleus | 29.26 | 28.92 |
| CDY01393 | Canola | nucleus | 29.38 | 28.9 |
| CDY29392 | Canola | nucleus | 29.49 | 28.65 |
| CDY39348 | Canola | nucleus | 29.49 | 28.56 |
| CDX94528 | Canola | nucleus | 21.97 | 27.95 |
| CDX83778 | Canola | nucleus | 31.73 | 26.47 |
| CDX96672 | Canola | nucleus | 31.61 | 26.37 |
| CDY26690 | Canola | nucleus | 32.2 | 26.12 |
| CDY41030 | Canola | nucleus | 31.84 | 25.61 |
| CDX92437 | Canola | nucleus | 31.14 | 25.48 |
| CDY16560 | Canola | nucleus | 30.67 | 25.05 |
| CDY24162 | Canola | nucleus | 19.04 | 24.92 |
| CDY45069 | Canola | nucleus | 30.79 | 23.54 |
Protein Annotations
| MapMan:15.5.5.1 | Gene3D:2.30.30.1040 | Gene3D:2.40.330.10 | Gene3D:3.10.20.90 | GO:A0A078EDT3 | InterPro:AUX/IAA_dom |
| InterPro:Auxin_resp | InterPro:B3_DNA-bd | EnsemblPlants:CDY00245 | ProteinID:CDY00245 | ProteinID:CDY00245.1 | InterPro:DNA-bd_pseudobarrel_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009725 |
| GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00109795001 | InterPro:IPR000270 | InterPro:IPR003340 | InterPro:IPR015300 |
| InterPro:PB1_dom | PFAM:PF02309 | PFAM:PF02362 | PFAM:PF06507 | PFscan:PS50863 | PFscan:PS51745 |
| PANTHER:PTHR31384 | PANTHER:PTHR31384:SF8 | SMART:SM01019 | SUPFAM:SSF101936 | SUPFAM:SSF54277 | UniParc:UPI0004EDE0C3 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g21460D
Coordinates
chrLK031917:+:385359..390425
Molecular Weight (calculated)
94601.0 Da
IEP (calculated)
6.792
GRAVY (calculated)
-0.649
Length
851 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSDVSMKG NRGGGENFSS LGYSGPTGAA GESLKTQSNR SVAAERVVDP DAALYRELWH ACAGPLVTVP RQDDRVFYFP QGHIEQVEAS TNQAAEQQMP
101: LYDLPSKILC RVINVDLKAE ADTDEVYAQI TLLPEPVQDE NAIEKESPPP PPPRFQVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL
201: VAKDLHASEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQQGNVPS SVISSHSMHL GVLATAWHAI STGTMFTVYY
301: KPRTSPSEFI VPFDQYMESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIVG IEDSDPTRWA KSKWRSLKVR WDETTSIPRP DRVSPWKIEP ALSPPALSPV
401: PMPRPKRPRS NLAPSTPDSS MRIREGSSKA NMDPLPASGL SRVLQGQEYP TLRTKHVESG ECDAPENSVV WQSSADDDKV DVVSASRRYE NWISSGRHGP
501: TCTDLLSGFG TNIEPPHGHQ IPFYDRLSSS SPSVAARKIL SDQDGKFEYL ANQWQMMHSG LSLKLHESPK VPAASDASFQ GIGNPNYGEY ALPRAVTTEN
601: AAGNWPIRPR ALNYFEEAVH AQTREHVTKR PAVVEDEAAK PRDGNCRLFG IPLVNNVNGT DTTLSQRNNL NDCTGPTQIA SPKVQDLSDQ SKGSKSTNDH
701: REQGRPFPVN KPHPKDVQTK TNSCRSCTKV QKQGIALGRS VDLSKFQNYE ELVTELDRLF EFNGELMAPK KDWLIVYTDD ENDMMLVGDD PWQEFCCMVR
801: KIFIYTKEEV RKMNPGTLSC RNEEEPVVGE GSDAKDAKSA SNPSLSSAGN S
101: LYDLPSKILC RVINVDLKAE ADTDEVYAQI TLLPEPVQDE NAIEKESPPP PPPRFQVHSF CKTLTASDTS THGGFSVLRR HADECLPPLD MSRQPPTQEL
201: VAKDLHASEW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA GDAFIFLRGE NGELRVGVRR AMRQQGNVPS SVISSHSMHL GVLATAWHAI STGTMFTVYY
301: KPRTSPSEFI VPFDQYMESV KNNYSIGMRF KMRFEGEEAP EQRFTGTIVG IEDSDPTRWA KSKWRSLKVR WDETTSIPRP DRVSPWKIEP ALSPPALSPV
401: PMPRPKRPRS NLAPSTPDSS MRIREGSSKA NMDPLPASGL SRVLQGQEYP TLRTKHVESG ECDAPENSVV WQSSADDDKV DVVSASRRYE NWISSGRHGP
501: TCTDLLSGFG TNIEPPHGHQ IPFYDRLSSS SPSVAARKIL SDQDGKFEYL ANQWQMMHSG LSLKLHESPK VPAASDASFQ GIGNPNYGEY ALPRAVTTEN
601: AAGNWPIRPR ALNYFEEAVH AQTREHVTKR PAVVEDEAAK PRDGNCRLFG IPLVNNVNGT DTTLSQRNNL NDCTGPTQIA SPKVQDLSDQ SKGSKSTNDH
701: REQGRPFPVN KPHPKDVQTK TNSCRSCTKV QKQGIALGRS VDLSKFQNYE ELVTELDRLF EFNGELMAPK KDWLIVYTDD ENDMMLVGDD PWQEFCCMVR
801: KIFIYTKEEV RKMNPGTLSC RNEEEPVVGE GSDAKDAKSA SNPSLSSAGN S
001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
Arabidopsis Description
ARF2Auxin response factor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JM3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.