CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07460	Canola	nucleus	97.69	97.44
CDX74594	Canola	nucleus	79.33	75.46
GSMUA_Achr8P13630_001	Banana	cytosol, nucleus, plastid	28.88	75.25
CDY53537	Canola	nucleus	78.18	74.82
KRH17251	Soybean	nucleus	68.29	63.11
KRH72896	Soybean	nucleus	68.16	62.69
KRH30740	Soybean	nucleus	67.91	62.68
KRG98044	Soybean	nucleus	67.01	62.07
Solyc02g037530.2.1	Tomato	nucleus	65.6	60.69
Solyc03g031970.2.1	Tomato	nucleus	65.6	60.55
GSMUA_Achr4P25960_001	Banana	nucleus	60.85	59.18
GSMUA_Achr11P...	Banana	nucleus	60.85	58.52
Os04t0671900-01	Rice	nucleus	60.08	57.21
PGSC0003DMT400048034	Potato	nucleus	55.2	57.18
KXG27404	Sorghum	nucleus	60.08	57.14
Zm00001d001879_P036	Maize	nucleus	59.82	57.04
GSMUA_AchrUn_...	Banana	mitochondrion	37.36	56.95
TraesCS2A01G547800.1	Wheat	nucleus	58.66	54.99
TraesCS2D01G548900.1	Wheat	nucleus	58.66	54.86
HORVU2Hr1G121110.32	Barley	nucleus	58.92	54.77
TraesCS2B01G578500.1	Wheat	nucleus	58.54	54.74
VIT_04s0079g00200.t01	Wine grape	nucleus	48.65	53.61
CDY12048	Canola	nucleus	57.89	53.25
CDX90245	Canola	nucleus	58.15	53.17
CDY02285	Canola	nucleus	59.18	52.81
Zm00001d026590_P003	Maize	nucleus	56.35	51.77
CDY09598	Canola	nucleus	57.64	51.61
GSMUA_Achr8P13620_001	Banana	nucleus	24.39	39.26
CDX80025	Canola	nucleus	29.01	38.7
CDY27291	Canola	nucleus	30.55	38.45
CDX95705	Canola	nucleus	26.57	37.98
CDY47607	Canola	nucleus	29.01	37.42
CDY10978	Canola	nucleus	29.52	36.8
CDY50434	Canola	nucleus	29.27	36.48
CDY69758	Canola	nucleus	19.38	36.3
CDY03502	Canola	nucleus	27.73	36.0
CDY65065	Canola	nucleus	30.42	35.85
CDY33603	Canola	nucleus	30.3	35.7
CDY62586	Canola	nucleus	38.51	35.46
CDY67714	Canola	nucleus	24.13	35.4
CDX83741	Canola	nucleus	38.38	35.34
CDY61164	Canola	nucleus	38.25	34.61
CDY29392	Canola	nucleus	38.64	34.36
CDY21993	Canola	nucleus	24.01	34.31
CDY39348	Canola	nucleus	38.51	34.13
CDY01393	Canola	nucleus	37.87	34.1
CDY48583	Canola	nucleus	23.75	33.82
CDX96672	Canola	nucleus	44.16	33.73
CDX83778	Canola	nucleus	43.39	33.14
CDY49005	Canola	nucleus	23.62	33.03
CDX94748	Canola	endoplasmic reticulum, vacuole	15.66	32.97
CDX94777	Canola	nucleus	23.49	32.85
CDY36940	Canola	nucleus	23.11	32.49
CDY26690	Canola	nucleus	43.65	32.41
CDX92437	Canola	nucleus	43.0	32.21
CDY41030	Canola	nucleus	43.65	32.14
CDY53570	Canola	nucleus	20.67	32.14
CDY31545	Canola	nucleus	30.94	31.84
CDY41720	Canola	nucleus	22.46	31.82
CDY24168	Canola	nucleus	22.98	31.79
CDX80168	Canola	nucleus	30.81	31.62
CDY16560	Canola	nucleus	42.11	31.48
CDY54111	Canola	nucleus	22.85	31.39
CDY45069	Canola	nucleus	44.16	30.91
CDX87230	Canola	nucleus	32.73	30.8
CDY00245	Canola	nucleus	33.38	30.55
CDX86939	Canola	nucleus	33.25	30.47
CDY67247	Canola	nucleus	32.61	29.85
CDY55738	Canola	nucleus	20.41	29.44
CDY16798	Canola	nucleus	32.99	29.3
CDX94484	Canola	nucleus	20.92	26.04
CDX94528	Canola	nucleus	19.77	23.02
CDY24162	Canola	nucleus	17.33	20.77

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	GO:A0A078HPD8	UniProt:A0A078HPD8
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlants:CDY39274	ProteinID:CDY39274	ProteinID:CDY39274.1
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00067506001	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF2	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI0004EECAC9	SEG:seg	:	:	:

Description

BnaC06g27170DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078HPD8]

Coordinates

chrLK032444:-:150176..154783

Molecular Weight (calculated)

87283.5 Da

IEP (calculated)

6.460

GRAVY (calculated)

-0.495

Length

779 amino acids

Sequence
(BLAST)

001: MNLSSSGFGH QSHEGKKKCL NSELWHACAG PLVSLPSSGS RVVYFPQGHS EQVAATTNKE VEGHIPNYPT LPPQLICQLH NVTMHADLET DEVYAQMVLQ
101: PLTQEEQKDT FVPIELGIPS KQPSNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYTQ QPPAQELIAK DLHDNEWKFR HIFRGQPKRH LLTTGWSVFV
201: SAKRLVTGDS VIFIRNERNQ LLLGIRHATR PQTIVPSSML SSDSMHIGLL AAAAHAAATN SCFTVFYHPR SSSSEFVLPL PKYIKAVFHT RISVGMRFRM
301: LFETEESSVR RYMGTITGIG DLDSVLWPNS HWRSVKVGWD ESTAGERQAR ASLWEIEPLT TFPMYPSLFP LRLKRPWHPG ASSFQDSRGD LTWLRGGAGE
401: NGLLPLNYPS PNVFPWMQQR LDLLGTDQNQ QYQAMLAAGL QNFGGGGGDP LRQQFVHLQE PNHQYLQQQS APIIHNSDLQ QHHQQQQMPR HLLQSQTQIL
501: TENLPQQNMR QEVSSQAQQP DRVWQHSDLL SPSDFTNKFT SAATNPVQQQ NLTLQGSGDS SSHLLNFSIT GQSEQLPTQD WSLKHTHHPE TNYFSEPLSL
601: GQAYGRASPS SLEPPPSTQN LSLFGVDSDS GLFLPTTVPR FAADTSSMPL TDSGFQNTLQ ETTELAAHGV VEHTNNFVKV YKSGSVGRSL DISRFSSYNE
701: LREELGKMFD IKGLLEDAFR SGWQLVFVDK EDDILLLGDD PWESFVNSVW YIKILSPDDV HKMGEHGEGS SFPQNLTHF

Best Arabidopsis Sequence Match ( AT5G37020.1 )
(BLAST)

001: MKLSTSGLGQ QGHEGEKCLN SELWHACAGP LVSLPSSGSR VVYFPQGHSE QVAATTNKEV DGHIPNYPSL PPQLICQLHN VTMHADVETD EVYAQMTLQP
101: LTPEEQKETF VPIELGIPSK QPSNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDYTLQ PPAQELIARD LHDVEWKFRH IFRGQPKRHL LTTGWSVFVS
201: AKRLVAGDSV IFIRNEKNQL FLGIRHATRP QTIVPSSVLS SDSMHIGLLA AAAHASATNS CFTVFFHPRA SQSEFVIQLS KYIKAVFHTR ISVGMRFRML
301: FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWHAGT SSLPDGRGDL GSGLTWLRGG
401: GGEQQGLLPL NYPSVGLFPW MQQRLDLSQM GTDNNQQYQA MLAAGLQNIG GGDPLRQQFV QLQEPHHQYL QQSASHNSDL MLQQQQQQQA SRHLMHAQTQ
501: IMSENLPQQN MRQEVSNQPA GQQQQLQQPD QNAYLNAFKM QNGHLQQWQQ QSEMPSPSFM KSDFTDSSNK FATTASPASG DGNLLNFSIT GQSVLPEQLT
601: TEGWSPKASN TFSEPLSLPQ AYPGKSLALE PGNPQNPSLF GVDPDSGLFL PSTVPRFASS SGDAEASPMS LTDSGFQNSL YSCMQDTTHE LLHGAGQINS
701: SNQTKNFVKV YKSGSVGRSL DISRFSSYHE LREELGKMFA IEGLLEDPLR SGWQLVFVDK ENDILLLGDD PWESFVNNVW YIKILSPEDV HQMGDHGEGS
801: GGLFPQNPTH L

Arabidopsis Description

ARF8Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178UFA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.