CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67874
CDX68829
CDX72351
CDX75231
CDX75834
CDX75884
CDX80168
CDX80545
CDX82399
CDX82428
CDX83741
CDX87072
CDX88204
CDX89844
CDX92077
CDX94484
CDX94528
CDX94748
CDX94777
CDY01393
CDY03502
CDY04557
CDY06836
CDY10978
CDY11402
CDY13478
CDY15734
CDY18205
CDY19790
CDY20135
CDY21845
CDY21993
CDY24162
CDY24168
CDY25089
CDY27291
CDY29392
CDY31545
CDY32934
CDY33603
CDY34957
CDY36527
CDY36940
CDY39348
CDY39608
CDY41720
CDY43104
CDY47607
CDY48583
CDY49005
CDY50434
CDY53570
CDY54111
CDY55738
CDY58757
CDY61164
CDY62586
CDY64626
CDY65065
CDY67714
CDY69497
CDY69758
CDY71748

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23980.1	CDX89844	AT1G04100.1	21734647
AT4G23980.1	CDY18205	AT1G04100.1	21734647
AT4G23980.1	CDY36527	AT1G15050.1	21734647
AT4G23980.1	CDY39608	AT1G15050.1	21734647
AT4G23980.1	CDX83741	AT1G19850.1	22096563
AT4G23980.1	CDY01393	AT1G19850.1	22096563
AT4G23980.1	CDY29392	AT1G19850.1	22096563
AT4G23980.1	CDY39348	AT1G19850.1	22096563
AT4G23980.1	CDY61164	AT1G19850.1	22096563
AT4G23980.1	CDY62586	AT1G19850.1	22096563
AT4G23980.1	CDX94484	AT1G35240.1	21734647
AT4G23980.1	CDX94528	AT1G35240.1	21734647
AT4G23980.1	CDX94748	AT1G35240.1	21734647
AT4G23980.1	CDX94777	AT1G35240.1	21734647
AT4G23980.1	CDY21993	AT1G35240.1	21734647
AT4G23980.1	CDY24162	AT1G35240.1	21734647
AT4G23980.1	CDY24168	AT1G35240.1	21734647
AT4G23980.1	CDY36940	AT1G35240.1	21734647
AT4G23980.1	CDY41720	AT1G35240.1	21734647
AT4G23980.1	CDY48583	AT1G35240.1	21734647
AT4G23980.1	CDY49005	AT1G35240.1	21734647
AT4G23980.1	CDY53570	AT1G35240.1	21734647
AT4G23980.1	CDY54111	AT1G35240.1	21734647
AT4G23980.1	CDY55738	AT1G35240.1	21734647
AT4G23980.1	CDY67714	AT1G35240.1	21734647
AT4G23980.1	CDY69758	AT1G35240.1	21734647
AT4G23980.1	CDY27291	AT1G59750.1	22096563
AT4G23980.1	CDY33603	AT1G59750.1	22096563
AT4G23980.1	CDY65065	AT1G59750.1	22096563
AT4G23980.1	CDY04557	AT2G28350.1	22096563
AT4G23980.1	CDY15734	AT2G28350.1	22096563
AT4G23980.1	CDX75834	AT3G15540.1	22096563
AT4G23980.1	CDX82428	AT3G15540.1	22096563
AT4G23980.1	CDY20135	AT3G15540.1	22096563
AT4G23980.1	CDY21845	AT3G15540.1	22096563
AT4G23980.1	CDY71748	AT3G15540.1	22096563
AT4G23980.1	CDX75884	AT3G16500.1	21734647
AT4G23980.1	CDX82399	AT3G16500.1	21734647
AT4G23980.1	CDX92077	AT3G16500.1	21734647
AT4G23980.1	CDY34957	AT3G16500.1	21734647
AT4G23980.1	CDY43104	AT3G16500.1	21734647
AT4G23980.1	CDY64626	AT3G16500.1	21734647
AT4G23980.1	CDX67874	AT3G62100.1	21734647
AT4G23980.1	CDY11402	AT3G62100.1	21734647
AT4G23980.1	CDY25089	AT3G62100.1	21734647
AT4G23980.1	CDY58757	AT3G62100.1	21734647
AT4G23980.1	CDY03502	AT4G23980.1	22096563
AT4G23980.1	CDY10978	AT4G23980.1	22096563
AT4G23980.1	CDY47607	AT4G23980.1	22096563
AT4G23980.1	CDY50434	AT4G23980.1	22096563
AT4G23980.1	CDY06836	AT4G29080.1	21734647
AT4G23980.1	CDX68829	AT4G32280.1	21734647
AT4G23980.1	CDX72351	AT4G32280.1	21734647
AT4G23980.1	CDX75231	AT4G32280.1	21734647
AT4G23980.1	CDY13478	AT4G32280.1	21734647
AT4G23980.1	CDX80545	AT5G25890.1	21734647
AT4G23980.1	CDX87072	AT5G25890.1	21734647
AT4G23980.1	CDX88204	AT5G25890.1	21734647
AT4G23980.1	CDY19790	AT5G25890.1	21734647
AT4G23980.1	CDX80545	AT5G25890.1	22096563
AT4G23980.1	CDX87072	AT5G25890.1	22096563
AT4G23980.1	CDX88204	AT5G25890.1	22096563
AT4G23980.1	CDY19790	AT5G25890.1	22096563
AT4G23980.1	CDY32934	AT5G43700.1	21734647
AT4G23980.1	CDY69497	AT5G43700.1	21734647
AT4G23980.1	CDX80168	AT5G60450.1	22096563
AT4G23980.1	CDY31545	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03502	Canola	nucleus	93.87	94.5
CDY10978	Canola	nucleus	89.9	86.88
CDY50434	Canola	nucleus	88.91	85.92
AT4G23980.1	Thale cress	nucleus	86.26	81.66
CDX80025	Canola	nucleus	55.3	57.19
KRH65922	Soybean	nucleus	64.74	56.58
VIT_02s0025g01740.t01	Wine grape	nucleus	63.74	56.45
KRH00001	Soybean	nucleus	61.59	56.02
KRH75716	Soybean	nucleus	63.91	55.78
KRH49135	Soybean	nucleus	61.09	55.57
CDX95705	Canola	nucleus	50.0	55.41
Solyc08g082630.2.1	Tomato	nucleus	55.13	51.71
Solyc08g008380.2.1	Tomato	nucleus	58.44	51.68
PGSC0003DMT400031965	Potato	nucleus	55.96	51.6
GSMUA_Achr2P19760_001	Banana	nucleus	56.29	50.9
GSMUA_Achr10P...	Banana	nucleus	56.13	50.82
GSMUA_Achr7P24330_001	Banana	nucleus	55.63	50.45
GSMUA_AchrUn_...	Banana	nucleus	52.98	50.39
CDY27291	Canola	nucleus	49.67	48.47
CDY67714	Canola	nucleus	40.56	46.14
CDY21993	Canola	nucleus	41.56	46.05
CDY65065	Canola	nucleus	50.33	45.99
CDY33603	Canola	nucleus	50.17	45.84
CDY69758	Canola	nucleus	31.46	45.67
CDY48583	Canola	nucleus	40.89	45.16
CDY53570	Canola	nucleus	37.25	44.91
CDY41720	Canola	nucleus	39.9	43.82
CDX94748	Canola	endoplasmic reticulum, vacuole	25.99	42.43
EES02172	Sorghum	nucleus	47.68	41.86
CDX94777	Canola	nucleus	38.24	41.47
Os01t0236300-01	Rice	nucleus	47.85	41.34
CDY49005	Canola	nucleus	38.08	41.29
CDY36940	Canola	nucleus	37.42	40.79
CDY54111	Canola	nucleus	37.42	39.86
CDY55738	Canola	nucleus	35.43	39.63
CDY24168	Canola	nucleus	36.76	39.43
Zm00001d039267_P005	Maize	nucleus	45.03	39.31
CDX87230	Canola	nucleus	52.15	38.04
CDX86939	Canola	nucleus	52.81	37.53
TraesCS3A01G159200.1	Wheat	nucleus	47.02	37.42
TraesCS3B01G190100.1	Wheat	nucleus	46.85	37.34
CDY00245	Canola	nucleus	52.48	37.25
TraesCS3D01G166700.1	Wheat	nucleus	46.69	37.2
CDY67247	Canola	nucleus	51.82	36.78
CDY16798	Canola	nucleus	52.15	35.92
HORVU3Hr1G032230.6	Barley	nucleus, plastid	45.86	34.62
CDX94484	Canola	nucleus	35.1	33.87
CDY31545	Canola	nucleus	38.24	30.52
CDX80168	Canola	nucleus	37.75	30.04
CDY39274	Canola	nucleus	37.42	29.01
CDY07460	Canola	nucleus	37.25	28.81
CDX94528	Canola	nucleus	31.79	28.7
CDX74594	Canola	nucleus	37.25	27.47
CDY53537	Canola	nucleus	36.92	27.4
CDY12048	Canola	nucleus	37.25	26.56
CDY62586	Canola	nucleus	37.09	26.48
CDX83741	Canola	nucleus	37.09	26.48
CDX90245	Canola	nucleus	37.09	26.29
CDY61164	Canola	nucleus	37.09	26.02
CDY01393	Canola	nucleus	37.25	26.01
CDY24162	Canola	nucleus	27.98	26.0
CDY02285	Canola	nucleus	37.42	25.89
CDY09598	Canola	nucleus	37.25	25.86
CDY29392	Canola	nucleus	37.42	25.8
CDY39348	Canola	nucleus	37.25	25.6
CDX83778	Canola	nucleus	38.08	22.55
CDX96672	Canola	nucleus	37.91	22.45
CDY26690	Canola	nucleus	38.24	22.02
CDX92437	Canola	nucleus	37.58	21.83
CDY16560	Canola	nucleus	37.58	21.79
CDY41030	Canola	nucleus	38.08	21.74
CDY45069	Canola	nucleus	37.58	20.4

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	GO:A0A078IBW5	UniProt:A0A078IBW5
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlants:CDY47607	ProteinID:CDY47607	ProteinID:CDY47607.1
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00087815001	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF1	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI0004EF31A2	SEG:seg	:	:	:

Description

BnaA01g13580DAuxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A078IBW5]

Coordinates

chrLK032726:-:8575..12167

Molecular Weight (calculated)

68581.4 Da

IEP (calculated)

6.461

GRAVY (calculated)

-0.586

Length

604 amino acids

Sequence
(BLAST)

001: MYEELWKLSA GPLVDVPQAE ERVYYFPQGH MEQLEASTQQ DLNTMKPLFD LPPKILCRVM NVRLQAEKDT DEVYAQIMLM PEVTVDEPMS PDPSPPEPQR
101: PKFHSFTKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYKWKFKH IFRGQPRRHL LTTGWSTFVT SKKLVAGDTF VFLRGENGEL
201: RVGVRRANRQ QSSMPSSVIS SHSMHLGVLA TACHATQTRS MFTVYYKPRT SQFIISLNKY LEAMNNKFSV GMRFKMRFEG DDSPERRFSG TVVGVQDCSP
301: HWKDSKWRSL VVNWDEPASF TRPDKVSPWE MEPFAASENV PQSVNKRPRH VNEVSALDVG VPSSNFWSSA LTQSHEFAQS CITSQRNPPQ NSDWPVSPYS
401: TLNGQMVFPV EQKKPETTTA SCRLFGIDLM SSSLPAPEEK TAPMRPINIT KPTLDSNTDP KSEISKLSEE KKQEPAQASP KEVQSKQINS SRSRTKVQMQ
501: GVPVGRAVDL TLINGYVELI DDLEKLFDIE GELKSRNQWE IVFTDDEGDM MLVGDDPWPE FCNMVKRIFI WSKEEVKKMT PGNQLRILLT EVDTTISKTE
601: NYSN

Best Arabidopsis Sequence Match ( AT4G23980.1 )
(BLAST)

001: MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS
101: PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF
201: VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG
301: TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV PKSVMLKNKR PRQVSEVSAL DVGITASNLW SSVLTQPHEF AQSCITSQWS
401: SPQQCHRDAN EDAKKSDWLN NSYSVSNVAK DSTLNDQMVS PVEQKKPETT ANYRLFGIDL MSSSLAVPEE KTAPMRPINI SKPTMDSHSD PKSEISKVSE
501: EKKQEPAEGS PKEVQSKQSS STRSRTKVQM QGVPVGRAVD LNALKGYNEL IDDIEKLFDI KGELRSRNQW EIVFTDDEGD MMLVGDDPWP EFCNMVKRIF
601: IWSKEEVKKM TPGNQLRMLL REVETTLTTT SKTDNHSN

Arabidopsis Description

ARF9Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.