Factsheet for AT4G23980.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10978	Canola	nucleus	84.95	86.72
Bra019255.1-P	Field mustard	nucleus	84.48	86.52
CDY47607	Canola	nucleus	81.66	86.26
Bra013748.1-P	Field mustard	nucleus	80.72	85.55
CDY50434	Canola	nucleus	83.7	85.44
CDY03502	Canola	nucleus	77.59	82.5
VIT_02s0025g01740.t01	Wine grape	nucleus	63.17	59.09
KRH65922	Soybean	nucleus	61.6	56.87
KRH00001	Soybean	nucleus	58.93	56.63
KRH75716	Soybean	nucleus	61.13	56.36
KRH49135	Soybean	nucleus	58.46	56.17
AT3G61830.1	Thale cress	nucleus	51.72	54.82
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	52.35	53.7
PGSC0003DMT400031965	Potato	nucleus	54.39	52.98
Solyc08g008380.2.1	Tomato	nucleus	56.43	52.71
Solyc08g082630.2.1	Tomato	nucleus	53.13	52.64
GSMUA_Achr7P24330_001	Banana	nucleus	54.39	52.1
GSMUA_Achr10P...	Banana	nucleus	54.23	51.87
GSMUA_Achr2P19760_001	Banana	nucleus	54.23	51.8
GSMUA_AchrUn_...	Banana	nucleus	50.78	51.02
AT1G34390.1	Thale cress	nucleus	45.61	48.66
AT1G35240.1	Thale cress	nucleus	44.83	48.31
AT1G35540.1	Thale cress	nucleus	45.45	47.93
AT1G34410.1	Thale cress	nucleus	45.14	47.52
AT1G35520.1	Thale cress	nucleus	44.04	47.39
AT1G34310.1	Thale cress	nucleus	43.89	47.22
AT1G59750.1	Thale cress	nucleus	47.81	45.86
AT1G34170.3	Thale cress	nucleus	38.24	44.69
Os01t0236300-01	Rice	nucleus	45.45	41.49
EES02172	Sorghum	nucleus	44.51	41.28
Zm00001d039267_P005	Maize	nucleus	42.16	38.87
TraesCS3B01G190100.1	Wheat	nucleus	44.98	37.86
TraesCS3A01G159200.1	Wheat	nucleus	44.98	37.81
TraesCS3D01G166700.1	Wheat	nucleus	44.83	37.73
AT5G62000.1	Thale cress	nucleus	49.37	36.67
HORVU3Hr1G032230.6	Barley	nucleus, plastid	44.2	35.25
AT5G60450.1	Thale cress	nucleus	38.24	30.96
AT5G37020.1	Thale cress	nucleus	36.21	28.48
AT1G19850.1	Thale cress	nucleus	36.21	25.61
AT1G30330.3	Thale cress	nucleus	35.74	24.39
AT1G19220.1	Thale cress	nucleus	37.77	22.19
AT5G20730.1	Thale cress	nucleus	36.21	19.83

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:828498	UniProt:A0A178V403
ProteinID:AAB63625.1	ProteinID:AEE84835.1	ProteinID:AEE84836.1	EMBL:AF082176	EMBL:AF344312	EMBL:AK221865
EMBL:AK228263	Symbol:ARF9	ArrayExpress:AT4G23980	EnsemblPlantsGene:AT4G23980	RefSeq:AT4G23980	TAIR:AT4G23980
RefSeq:AT4G23980-TAIR-G	EnsemblPlants:AT4G23980.1	TAIR:AT4G23980.1	InterPro:AUX/IAA_dom	Unigene:At.3396	InterPro:Auxin_resp
InterPro:B3_DNA-bd	ProteinID:CAB43898.1	ProteinID:CAB81316.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725
GO:GO:0009734	GO:GO:0009987	GO:GO:0043565	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300
RefSeq:NP_001031706.1	RefSeq:NP_194129.1	ProteinID:OAP00451.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025281	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF1	UniProt:Q9XED8
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI00000A74B4	SEG:seg	:

Description

ARF9Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]

Coordinates

chr4:+:12451143..12455369

Molecular Weight (calculated)

72281.8 Da

IEP (calculated)

6.954

GRAVY (calculated)

-0.601

Length

638 amino acids

Sequence
(BLAST)

001: MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS
101: PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF
201: VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG
301: TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV PKSVMLKNKR PRQVSEVSAL DVGITASNLW SSVLTQPHEF AQSCITSQWS
401: SPQQCHRDAN EDAKKSDWLN NSYSVSNVAK DSTLNDQMVS PVEQKKPETT ANYRLFGIDL MSSSLAVPEE KTAPMRPINI SKPTMDSHSD PKSEISKVSE
501: EKKQEPAEGS PKEVQSKQSS STRSRTKVQM QGVPVGRAVD LNALKGYNEL IDDIEKLFDI KGELRSRNQW EIVFTDDEGD MMLVGDDPWP EFCNMVKRIF
601: IWSKEEVKKM TPGNQLRMLL REVETTLTTT SKTDNHSN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.