Factsheet for AT1G35520.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G34390.1	Thale cress	nucleus	91.23	90.47
AT1G34310.1	Thale cress	nucleus	90.22	90.22
AT1G35240.1	Thale cress	nucleus	90.05	90.2
AT1G34410.1	Thale cress	nucleus	91.57	89.6
AT1G35540.1	Thale cress	nucleus	86.85	85.12
AT1G34170.3	Thale cress	nucleus	50.42	54.76
Bra034234.1-P	Field mustard	nucleus	48.06	52.68
CDY53570	Canola	nucleus	44.35	52.49
CDY21993	Canola	nucleus	48.23	52.48
CDY48583	Canola	nucleus	48.23	52.29
Bra027944.1-P	Field mustard	nucleus	48.06	51.91
CDY41720	Canola	nucleus	48.06	51.82
CDY67714	Canola	nucleus	46.04	51.41
CDY49005	Canola	nucleus	48.06	51.17
CDX94777	Canola	nucleus	47.55	50.63
CDY36940	Canola	nucleus	46.54	49.82
Bra017362.1-P	Field mustard	nucleus	45.19	49.63
Bra018124.1-P	Field mustard	nucleus	46.37	49.55
CDY55738	Canola	nucleus	44.86	49.26
CDY54111	Canola	nucleus	46.71	48.85
CDY24168	Canola	nucleus	46.04	48.49
CDX94748	Canola	endoplasmic reticulum, vacuole	30.02	48.11
CDY69758	Canola	nucleus	33.56	47.84
AT4G23980.1	Thale cress	nucleus	47.39	44.04
KRH49135	Soybean	nucleus	46.21	41.27
VIT_02s0025g01740.t01	Wine grape	nucleus	46.37	40.32
CDX94484	Canola	nucleus	42.33	40.1
KRH00001	Soybean	nucleus	44.86	40.06
KRH65922	Soybean	nucleus	45.53	39.07
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	40.47	38.59
KRH75716	Soybean	nucleus	44.86	38.44
GSMUA_AchrUn_...	Banana	nucleus	40.64	37.95
AT3G61830.1	Thale cress	nucleus	38.45	37.87
GSMUA_Achr2P19760_001	Banana	nucleus	41.48	36.83
GSMUA_Achr10P...	Banana	nucleus	41.32	36.73
PGSC0003DMT400031965	Potato	nucleus	40.47	36.64
CDX94528	Canola	nucleus	41.32	36.62
Solyc08g008380.2.1	Tomato	nucleus	42.16	36.6
Solyc08g082630.2.1	Tomato	nucleus	39.63	36.49
GSMUA_Achr7P24330_001	Banana	nucleus	40.64	36.19
AT1G59750.1	Thale cress	nucleus	38.95	34.74
Os01t0236300-01	Rice	nucleus	38.45	32.62
EES02172	Sorghum	nucleus	37.61	32.41
CDY24162	Canola	nucleus	34.57	31.54
Zm00001d039267_P005	Maize	nucleus	35.41	30.35
TraesCS3B01G190100.1	Wheat	nucleus	37.94	29.68
TraesCS3A01G159200.1	Wheat	nucleus	37.94	29.64
TraesCS3D01G166700.1	Wheat	nucleus	37.77	29.55
AT5G62000.1	Thale cress	nucleus	41.65	28.75
HORVU3Hr1G032230.6	Barley	nucleus, plastid	37.77	28.0
AT5G60450.1	Thale cress	nucleus	34.57	26.02
AT5G37020.1	Thale cress	nucleus	33.39	24.41
AT1G30330.3	Thale cress	nucleus	35.08	22.25
AT1G19850.1	Thale cress	nucleus	33.56	22.06
AT1G19220.1	Thale cress	nucleus	35.24	19.24
AT5G20730.1	Thale cress	nucleus	32.88	16.74

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:840447	ProteinID:AAF79360.1
ProteinID:AEE31805.2	Symbol:ARF15	ArrayExpress:AT1G35520	EnsemblPlantsGene:AT1G35520	RefSeq:AT1G35520	TAIR:AT1G35520
RefSeq:AT1G35520-TAIR-G	EnsemblPlants:AT1G35520.1	TAIR:AT1G35520.1	InterPro:AUX/IAA_dom	Unigene:At.51956	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	RefSeq:NP_001319151.1	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF1	UniProt:Q9LQE3
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI00003588E3	:	:

Description

ARF15Putative auxin response factor 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQE3]

Coordinates

chr1:-:13082819..13085830

Molecular Weight (calculated)

67425.0 Da

IEP (calculated)

8.388

GRAVY (calculated)

-0.383

Length

593 amino acids

Sequence
(BLAST)

001: METGNVVNAQ PELSGIIDRS KSYMYEQLWK LCAGPLCDIP KLGEKVYYFP QGNIELVEAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAKI
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDISANGV FSVPKKHAIE CLPPLDMSQP LPAQELLAID LHGNQWSFRH SYRGTPQRHL LTTGWNEFTT
201: SKKLVKGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVIA SAKHAFDNQC MFIVVYKPRS SQFIVSYDKF LDAVNNKFNV GSRFTMRFEG
301: DDLSERRYFG TIIGVSNFSP HWKCSDWRSL EVQWDEFASF LRPNKVSPWE IEHLMPALNV PRSSFLKNKR LREVNEFGSS SSHLLPPILT QGQEIGQLSV
401: ASPMNISLLY RETTEDAMNP SRLLMSYPVQ PMPKRNYNNQ MVTQIEENIT TKAGTNFRLF GVSLATPPVI KDPIEQIGSD ISKLTEGKKF GQSQTLRSPT
501: KIQSKQFSST RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDLKG QLQTRNQWKI IFTGSDEDEM LVGDDPWPEF CNMVKRIYIQ KRR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.