Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytoskeleton, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001670.1-P
Bra001900.1-P
Bra002327.1-P
Bra009867.1-P
Bra010048.1-P
Bra012190.1-P
Bra013748.1-P
Bra015298.1-P
Bra016492.1-P
Bra017362.1-P
Bra018124.1-P
Bra019255.1-P
Bra020125.1-P
Bra021257.1-P
Bra022224.1-P
Bra025775.1-P
Bra026755.1-P
Bra027944.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra034234.1-P
Bra035427.1-P
Bra035910.1-P
Bra036557.1-P
Bra040122.1-P
Bra040398.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G34310.1 Bra012190.1-P AT1G19850.1 22096563
AT1G34310.1 Bra016492.1-P AT1G19850.1 22096563
AT1G34310.1 Bra025775.1-P AT1G19850.1 22096563
AT1G34310.1 Bra017362.1-P AT1G34310.1 22096563
AT1G34310.1 Bra018124.1-P AT1G34310.1 22096563
AT1G34310.1 Bra027944.1-P AT1G34310.1 22096563
AT1G34310.1 Bra034234.1-P AT1G34310.1 22096563
AT1G34310.1 Bra035427.1-P AT1G59750.1 22096563
AT1G34310.1 Bra001670.1-P AT3G17600.1 21734647
AT1G34310.1 Bra021257.1-P AT3G17600.1 21734647
AT1G34310.1 Bra022224.1-P AT3G17600.1 21734647
AT1G34310.1 Bra013748.1-P AT4G23980.1 22096563
AT1G34310.1 Bra019255.1-P AT4G23980.1 22096563
AT1G34310.1 Bra010048.1-P AT5G62000.1 21734647
AT1G34310.1 Bra035910.1-P AT5G62000.1 21734647
AT1G34390.1 Bra017362.1-P AT1G34310.1 21734647
AT1G34390.1 Bra018124.1-P AT1G34310.1 21734647
AT1G34390.1 Bra027944.1-P AT1G34310.1 21734647
AT1G34390.1 Bra034234.1-P AT1G34310.1 21734647
AT1G34390.1 Bra040476.1-P AT2G46990.1 21734647
AT1G34390.1 Bra040122.1-P AT3G04730.1 21734647
AT1G34390.1 Bra040398.1-P AT3G04730.1 21734647
AT1G34390.1 Bra001900.1-P AT3G23050.1 21734647
AT1G34390.1 Bra033886.1-P AT3G23050.1 21734647
AT1G34390.1 Bra009867.1-P AT5G25890.1 21734647
AT1G34390.1 Bra036557.1-P AT5G25890.1 21734647
AT1G35240.1 Bra015298.1-P AT1G04250.1 21734647
AT1G35240.1 Bra030560.1-P AT1G04250.1 21734647
AT1G35240.1 Bra032520.1-P AT1G04250.1 21734647
AT1G35240.1 Bra026755.1-P AT1G15580.1 21734647
AT1G35240.1 Bra002327.1-P AT5G20730.1 21734647
AT1G35240.1 Bra020125.1-P AT5G20730.1 21734647
AT1G35540.1 Bra026755.1-P AT1G15580.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY41720 Canola nucleus 99.82 99.64
Bra017362.1-P Field mustard nucleus 83.06 84.44
Bra018124.1-P Field mustard nucleus 76.32 75.5
Bra034234.1-P Field mustard nucleus 60.84 61.74
AT1G34390.1 Thale cress nucleus 52.64 48.33
AT1G35240.1 Thale cress nucleus 52.09 48.31
AT1G35520.1 Thale cress nucleus 51.91 48.06
AT1G34410.1 Thale cress nucleus 52.82 47.85
AT1G34310.1 Thale cress nucleus 51.37 47.55
AT1G34170.3 Thale cress nucleus 47.18 47.44
AT1G35540.1 Thale cress nucleus 52.09 47.27
Bra014419.1-P Field mustard nucleus 40.8 40.36
Bra013748.1-P Field mustard nucleus 43.53 39.7
Bra019255.1-P Field mustard nucleus 43.53 38.36
Bra004530.1-P Field mustard nucleus 39.71 37.33
VIT_02s0025g01740.t01 Wine grape nucleus 44.99 36.22
KRH49135 Soybean nucleus 41.35 34.19
KRH00001 Soybean nucleus 40.8 33.73
KRH65922 Soybean nucleus 42.44 33.72
GSMUA_AchrUn_... Banana nucleus 38.98 33.7
KRH75716 Soybean nucleus 42.44 33.67
PGSC0003DMT400031965 Potato nucleus 39.71 33.28
Solyc08g008380.2.1 Tomato nucleus 41.35 33.24
GSMUA_Achr10P... Banana nucleus 39.89 32.83
GSMUA_Achr2P19760_001 Banana nucleus 39.89 32.78
Bra035427.1-P Field mustard nucleus 39.16 32.33
Solyc08g082630.2.1 Tomato nucleus 37.52 31.99
GSMUA_Achr7P24330_001 Banana nucleus 38.43 31.68
Bra025775.1-P Field mustard nucleus 26.41 30.85
Os01t0236300-01 Rice nucleus 36.25 28.47
EES02172 Sorghum nucleus 34.97 27.91
Zm00001d039267_P005 Maize nucleus 34.61 27.46
TraesCS3D01G166700.1 Wheat nucleus 36.25 26.25
TraesCS3B01G190100.1 Wheat nucleus 36.25 26.25
TraesCS3A01G159200.1 Wheat nucleus 36.25 26.22
Bra010048.1-P Field mustard nucleus 39.53 25.5
HORVU3Hr1G032230.6 Barley nucleus, plastid 36.61 25.12
Bra035910.1-P Field mustard nucleus 38.43 23.76
Bra002479.1-P Field mustard nucleus 31.69 22.96
Bra004125.1-P Field mustard nucleus 32.06 22.56
Bra007632.1-P Field mustard nucleus 39.53 20.57
Bra028110.1-P Field mustard nucleus 31.51 20.5
Bra010776.1-P Field mustard nucleus 30.6 20.19
Bra016492.1-P Field mustard nucleus 30.24 19.86
Bra012190.1-P Field mustard nucleus 30.42 19.26
Bra016517.1-P Field mustard nucleus 31.15 16.93
Bra025720.1-P Field mustard nucleus 32.24 16.87
Bra020125.1-P Field mustard nucleus 31.33 15.64
Bra002327.1-P Field mustard nucleus 30.78 11.74
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90ProteinID:AFD01320ProteinID:AFD01320.1
InterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlantsGene:Bra027944EnsemblPlants:Bra027944.1EnsemblPlants:Bra027944.1-PInterPro:DNA-bd_pseudobarrel_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719
GO:GO:0009725GO:GO:0009734GO:GO:0009987UniProt:H9B4E7InterPro:IPR000270InterPro:IPR003340
InterPro:IPR015300EMBL:JN979486InterPro:PB1_domPFAM:PF02362PFAM:PF06507PFscan:PS50863
PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF1SMART:SM01019SUPFAM:SSF101936SUPFAM:SSF54277
UniParc:UPI0002535827SEG:seg::::
Description
AT1G35240 (E=8e-118) ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20); transcription factor
Coordinates
chrA09:-:10029568..10032526
Molecular Weight (calculated)
62384.7 Da
IEP (calculated)
6.465
GRAVY (calculated)
-0.370
Length
549 amino acids
Sequence
(BLAST)
001: MAGDQIMHAQ PEVLAIGETN NYLNDKLWKL CAGPLFDTPK IGEKLVASMD DELCQLKPIF DIPSKICCNV FSINLKVEPS TNEIYAEVSL LPDTSDVEIP
101: IPKNENNIQN INYFTKVLSA SDTSTNGGFV LYKRHAIECL PLLDMSQLTP SQEIIAKDIH GHEWSFKHTS RGTPKRHLFT SGWNEFAKGK KLVAGDSFVF
201: LRGENGESRV GISKAAHQQR NIPTSLISKE SMHHSVVATA LNAIENKCMF VVFYKPRSSQ FIVNFDKFVD RVNNKFSIGS KFSMKFEGKD LNEIRYNGTV
301: VGVRDFSTHW KDSEWRSLEV QWDEAATIPR PDKVSPWEIE LLTHSSNIFK SDALKHKRQL EVHEFGSKMW APTIYNEQMV QAMKEPSTTT ATTSCRLFGV
401: DLMVPAITKD PVEPIVSNKK CKISKIFEDE KVDHVQAKSR TKVHMEGVIE RTVDLTIFDG YNQLIDELER LFDIKGELHM HNKWKMFFIY NDGDMMILGD
501: DPWPKFCNMA KEIFICSKED VKIGIANNRF SEGDPTLTTT ILPPDVNNT
Best Arabidopsis Sequence Match ( AT1G35240.1 )
(BLAST)
001: METGNVVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGENVYYFP QGNIELVDAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQSENQFR PLVNSFTKVL TASDTSAYGG FFVPKKHAIE CLPPLDMSQP LPAQELLAKD LHGNQWRFRH SYRGTPQRHS LTTGWNEFTT
201: SKKLVKGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVIA SAKHALDNQC IFIVVYKPRS SQFIVSYDKF LDAMNNKFIV GSRFTMRFEG
301: DDFSERRYFG TIIGVNDFSP HWKCSEWRSL EVQWDEFASF SRPNKVSPWE IEHLMSALNV PRSSLLKNKR LREVNEFGQE IGQLSVASPM NTSLRYRDTT
401: EDAMNPSRLL MSYPVQPMPK LNYNNQMVTQ IEENITTKAV TNFRLFGVSL AIPLVIKDPI EEIGSDISKL TEGKKFGQSQ TLRSPIEIQS KQFGSTRTCT
501: KVQMQGVTIG RAVDLSVLNG YDQLILELEK LFDLKGQLQT RNQWKIAFTD SDGYEMLVGD DPWPEFCKMV KKILIYSKEE VKNLKSSKSL SS
Arabidopsis Description
ARF20auxin response factor 20 [Source:TAIR;Acc:AT1G35240]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.