Factsheet for Bra035427.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007632.1-P
Bra011955.1-P
Bra012910.1-P
Bra014419.1-P
Bra029990.1-P
Bra035427.1-P
Bra036048.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	Bra035427.1-P	AT1G59750.1	22096563
AT1G59750.1	Bra035427.1-P	AT1G59750.1	24485461
AT1G59750.1	Bra011955.1-P	AT2G28350.1	22096563
AT1G59750.1	Bra012910.1-P	AT3G50060.1	17675404
AT1G59750.1	Bra029990.1-P	AT3G50060.1	17675404
AT1G59750.1	Bra036048.1-P	AT3G50060.1	17675404
AT1G59750.1	Bra007632.1-P	AT3G61830.1	22096563
AT1G59750.1	Bra014419.1-P	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65065	Canola	nucleus	98.95	99.55
CDY33603	Canola	nucleus	98.5	99.09
AT1G59750.1	Thale cress	nucleus	94.29	94.29
KRH26266	Soybean	nucleus	70.08	70.08
KRH06026	Soybean	nucleus	69.77	69.77
VIT_12s0035g01800.t01	Wine grape	nucleus	70.83	69.47
Solyc01g103050.2.1	Tomato	nucleus	67.22	68.35
PGSC0003DMT400053380	Potato	nucleus	66.77	67.89
KRH51289	Soybean	nucleus	68.57	67.66
GSMUA_Achr9P08310_001	Banana	vacuole	45.11	61.6
GSMUA_Achr10P...	Banana	nucleus	61.35	60.53
Zm00001d050781_P001	Maize	nucleus	56.99	60.16
GSMUA_Achr6P07390_001	Banana	nucleus	59.1	60.0
Os02t0557200-01	Rice	nucleus	60.9	59.73
Os04t0442000-01	Rice	nucleus	60.0	59.29
EES06968	Sorghum	nucleus	59.85	59.23
TraesCS2D01G307600.1	Wheat	nucleus	57.59	58.56
EES10850	Sorghum	nucleus	58.2	58.55
TraesCS2B01G326400.1	Wheat	nucleus	57.44	58.41
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	60.9	58.11
TraesCS2A01G309300.1	Wheat	nucleus	57.14	58.1
GSMUA_Achr6P12780_001	Banana	nucleus	60.75	58.05
HORVU2Hr1G076920.3	Barley	nucleus	57.14	56.89
Zm00001d016838_P001	Maize	nucleus	59.4	56.19
Zm00001d003601_P006	Maize	nucleus	57.14	55.72
Bra014419.1-P	Field mustard	nucleus	45.41	54.41
Bra004530.1-P	Field mustard	nucleus	45.11	51.37
Bra013748.1-P	Field mustard	nucleus	46.02	50.83
Bra019255.1-P	Field mustard	nucleus	44.81	47.83
Bra025775.1-P	Field mustard	nucleus	29.77	42.13
Bra034234.1-P	Field mustard	nucleus	32.48	39.93
Bra010048.1-P	Field mustard	nucleus	50.68	39.6
Bra027944.1-P	Field mustard	nucleus	32.33	39.16
Bra035910.1-P	Field mustard	nucleus	50.23	37.61
Bra018124.1-P	Field mustard	nucleus	29.47	35.32
Bra017362.1-P	Field mustard	nucleus	28.27	34.81
Bra002479.1-P	Field mustard	nucleus	36.39	31.93
Bra004125.1-P	Field mustard	nucleus	35.79	30.51
Bra007632.1-P	Field mustard	nucleus	45.26	28.53
Bra028110.1-P	Field mustard	nucleus	36.09	28.44
Bra010776.1-P	Field mustard	nucleus	34.14	27.28
Bra016492.1-P	Field mustard	nucleus	34.29	27.27
Bra012190.1-P	Field mustard	nucleus	34.14	26.18
Bra025720.1-P	Field mustard	nucleus	36.54	23.16
Bra016517.1-P	Field mustard	nucleus	34.89	22.97
Bra020125.1-P	Field mustard	nucleus	35.19	21.27
Bra002327.1-P	Field mustard	nucleus	35.34	16.33

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01292	ProteinID:AFD01292.1
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra035427	EnsemblPlants:Bra035427.1	EnsemblPlants:Bra035427.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733	GO:GO:0009734	GO:GO:0009987
GO:GO:0010150	GO:GO:0042802	GO:GO:0045892	UniProt:H9B4B9	InterPro:IPR000270	InterPro:IPR003340
InterPro:IPR015300	EMBL:JN979458	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362	PFAM:PF06507
PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF24	SMART:SM01019	SUPFAM:SSF101936
SUPFAM:SSF54277	UniParc:UPI00025356EC	SEG:seg	:	:	:

Description

AT1G59750 (E=0.0) ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA binding / transcription factor

Coordinates

chrA01:+:16386019..16389652

Molecular Weight (calculated)

73800.9 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.554

Length

665 amino acids

Sequence
(BLAST)

001: MAASNHPCGK PGGALSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: ADQSEPMSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NNEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKNQKLAV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANNT PSAHLPPQRN KRPRPPGLLS PTTAPSTPVT ADGVWKSPAD
401: NPSSVPLFSP PAKTAAFGLG GNKSFGVSIG SAFWPTHADG AAESFASALN NESPTEKKQT NGNVCRLFGF ELVENMNVDE CFSAASVSGA VAVDQPVPSN
501: EFDSGQQSES LNINQANLPS GSGDHEKSSL RSPQKSQSRQ IRSCTKVHMQ GSAVGRAVDL TRSECYEDLF KKLEEMFDIK GELLESTKKW QVVYTDDEDD
601: MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLTVNV RMQPKTDADE NGNTEGRSSS MAGSR

Best Arabidopsis Sequence Match ( AT1G59750.1 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSGPV TPDGVWKSPA
401: DTPSSVPLFS PPAKAATFGH GGNKSFGVSI GSAFWPTNAD SAAESFASAF NNESTEKKQT NGNVCRLFGF ELVENVNVDE CFSAASVSGA VAVDQPVPSN
501: EFDSGQQSEP LNINQSDIPS GSGDPEKSSL RSPQESQSRQ IRSCTKVHMQ GSAVGRAIDL TRSECYEDLF KKLEEMFDIK GELLESTKKW QVVYTDDEDD
601: MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLAVNA RMQLKADAEE NGNTEGRSSS MAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.