Factsheet for Bra004530.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80025	Canola	nucleus	98.97	98.97
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	85.79	80.55
Bra014419.1-P	Field mustard	nucleus	68.15	71.71
Bra013748.1-P	Field mustard	nucleus	57.02	55.32
VIT_15s0046g00290.t01	Wine grape	nucleus	66.1	54.99
KRH68924	Soybean	nucleus	60.62	53.47
Bra019255.1-P	Field mustard	nucleus	56.51	52.97
PGSC0003DMT400000345	Potato	nucleus	61.3	52.26
Solyc01g096070.2.1	Tomato	nucleus	61.13	51.81
GSMUA_AchrUn_...	Banana	nucleus	56.16	51.65
GSMUA_Achr10P...	Banana	nucleus	58.56	51.27
GSMUA_Achr2P19760_001	Banana	nucleus	57.19	50.0
GSMUA_Achr7P24330_001	Banana	nucleus	56.85	49.85
KRH06451	Soybean	nucleus	60.79	49.58
KRH47893	Soybean	nucleus	60.1	49.02
Bra035427.1-P	Field mustard	nucleus	51.37	45.11
Bra034234.1-P	Field mustard	nucleus	39.04	42.14
Os01t0236300-01	Rice	nucleus	50.34	42.06
EES02172	Sorghum	nucleus	48.46	41.13
Bra025775.1-P	Field mustard	nucleus	32.71	40.64
Bra027944.1-P	Field mustard	nucleus	37.33	39.71
Bra007632.1-P	Field mustard	nucleus	70.72	39.15
TraesCS3B01G190100.1	Wheat	nucleus	50.17	38.65
TraesCS3A01G159200.1	Wheat	nucleus	50.17	38.6
TraesCS3D01G166700.1	Wheat	nucleus	50.0	38.52
Zm00001d039267_P005	Maize	nucleus	44.86	37.86
Bra018124.1-P	Field mustard	nucleus	35.79	37.66
Bra017362.1-P	Field mustard	nucleus	33.9	36.67
HORVU3Hr1G032230.6	Barley	nucleus, plastid	50.0	36.5
Bra010048.1-P	Field mustard	nucleus	52.91	36.31
Bra035910.1-P	Field mustard	nucleus	52.57	34.57
Bra002479.1-P	Field mustard	nucleus	38.87	29.95
Bra004125.1-P	Field mustard	nucleus	38.7	28.97
Bra028110.1-P	Field mustard	nucleus	39.21	27.13
Bra010776.1-P	Field mustard	nucleus	38.36	26.92
Bra016492.1-P	Field mustard	nucleus	37.5	26.2
Bra012190.1-P	Field mustard	nucleus	38.01	25.61
Bra016517.1-P	Field mustard	nucleus	36.3	20.99
Bra025720.1-P	Field mustard	nucleus	37.67	20.97
Bra020125.1-P	Field mustard	nucleus	37.84	20.09
Bra002327.1-P	Field mustard	nucleus	37.33	15.15

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01310	ProteinID:AFD01310.1
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra004530	EnsemblPlants:Bra004530.1	EnsemblPlants:Bra004530.1-P
InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009506	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	UniProt:H9B4D7
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EMBL:JN979476	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF17
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000253581D	SEG:seg	:

Description

AT2G46530 (E=4e-271) ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11); transcription factor

Coordinates

chrA05:-:651698..654589

Molecular Weight (calculated)

65893.5 Da

IEP (calculated)

7.329

GRAVY (calculated)

-0.504

Length

584 amino acids

Sequence
(BLAST)

001: MENVVDDQLY MELWKACAGP LVEVPRYDER VFYFPQGHME QLVASTNQRV VDKDIPVFNL PPKILCRVLN VMLKAEHETD EVYAQITLQP EEDQSEPTSL
101: DPPLTEPAKQ TVDSFVKILT ASDTSTHGGF SVLRKHATEC LPPLDMTQAT PTQELVARDL HGYEWRFKHI FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV
201: FLRGHQTGDL RVGVRRLAKQ QSTMPASVIS SQSMHLGVLA TASHAFNTTT MFVVLYKPRI SQFIISVNKY MAAMKKGFGI GMRFRMRFEG EESPERIFTG
301: TIVGTGDLSP QWPASKWRSL QVQWDESSTV QRPNKVSPWE IEPFLPSTLT TSPTQPYSKS KRSRPIDPSV SEITGSPVAS NFLSRFPKSH EPSPSLKLLF
401: QDPSSERNSN KTEAPATSCC RLFGFDLKSK PASAPNPNDK QQLISVDSNN TGSAKCQDPN SSKDQKQQTS STRSRTKVQM QGTAVGRAVD LTLLRSYDEL
501: IRELEKMFEI EGELRTKDKW AIVFTDDEGD MMLVGDDPWD EFCKMAKKLF IYSSDEVKKM SSKSLLDDEC TMVHLEPDQR TVKL

Best Arabidopsis Sequence Match ( AT2G46530.1 )
(BLAST)

001: MANVEADFRT SGSNDDELYT ELWKACAGPL VEVPRYGERV FYFPQGHMEQ LVASTNQGVV DQEIPVFNLP PKILCRVLSV TLKAEHETDE VYAQITLQPE
101: EDQSEPTSLD PPLVEPAKPT VDSFVKILTA SDTSTHGGFS VLRKHATECL PSLDMTQPTP TQELVARDLH GYEWRFKHIF RGQPRRHLLT TGWSTFVTSK
201: RLVAGDAFVF LRGETGDLRV GVRRLAKQQS TMPASVISSQ SMRLGVLATA SHAVTTTTIF VVFYKPRISQ FIISVNKYMM AMKNGFSLGM RYRMRFEGEE
301: SPERIFTGTI IGSGDLSSQW PASKWRSLQI QWDEPSSIQR PNKVSPWEIE PFSPSALTPT PTQQQSKSKR SRPISEITGS PVASSFLSSF SQSHESNPSV
401: KLLFQDPATE RNSNKSVFSS GLQCKITEAP VTSSCRLFGF DLTSKPASAT IPHDKQLISV DSNISDSTTK CQDPNSSNSP KEQKQQTSTR SRIKVQMQGT
501: AVGRAVDLTL LRSYDELIKE LEKMFEIEGE LSPKDKWAIV FTDDEGDRML VGDDPWNEFC KMAKKLFIYP SDEVKKMRSK SLLGDKGTIV NLESDQRTVH
601: V

Arabidopsis Description

ARF11Auxin response factor 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.