Factsheet for PGSC0003DMT400000345

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000345
PGSC0003DMT400006709
PGSC0003DMT400006800
PGSC0003DMT400015610
PGSC0003DMT400020839
PGSC0003DMT400031965
PGSC0003DMT400042572
PGSC0003DMT400093571

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61830.1	PGSC0003DMT400015610	AT1G04250.1	21734647
AT3G61830.1	PGSC0003DMT400031965	AT1G34310.1	22096563
AT3G61830.1	PGSC0003DMT400006709	AT1G51950.1	22096563
AT3G61830.1	PGSC0003DMT400006800	AT1G52830.1	22096563
AT3G61830.1	PGSC0003DMT400042572	AT1G52830.1	22096563
AT3G61830.1	PGSC0003DMT400006800	AT3G15540.1	22096563
AT3G61830.1	PGSC0003DMT400042572	AT3G15540.1	22096563
AT3G61830.1	PGSC0003DMT400000345	AT3G61830.1	22096563
AT3G61830.1	PGSC0003DMT400093571	AT5G57420.1	21734647
AT3G61830.1	PGSC0003DMT400020839	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096070.2.1	Tomato	nucleus	95.18	94.63
VIT_15s0046g00290.t01	Wine grape	nucleus	69.78	68.09
Bra014419.1-P	Field mustard	nucleus	50.07	61.8
Bra004530.1-P	Field mustard	nucleus	52.26	61.3
CDX80025	Canola	nucleus	52.12	61.13
CDX95705	Canola	nucleus	48.47	60.92
KRH68924	Soybean	nucleus	57.66	59.67
AT3G61830.1	Thale cress	nucleus	51.53	58.64
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	52.41	57.72
KRH47893	Soybean	nucleus	60.0	57.4
KRH06451	Soybean	nucleus	60.0	57.4
GSMUA_Achr10P...	Banana	nucleus	54.01	55.47
GSMUA_AchrUn_...	Banana	nucleus	51.09	55.12
GSMUA_Achr2P19760_001	Banana	nucleus	53.28	54.64
GSMUA_Achr7P24330_001	Banana	nucleus	52.99	54.5
PGSC0003DMT400031965	Potato	nucleus	51.68	54.05
PGSC0003DMT400053380	Potato	nucleus	49.49	51.83
Os01t0236300-01	Rice	nucleus	44.82	43.92
EES02172	Sorghum	nucleus	42.77	42.59
PGSC0003DMT400036765	Potato	nucleus	50.37	40.83
PGSC0003DMT400037454	Potato	nucleus	48.32	39.93
Zm00001d039267_P005	Maize	nucleus	40.29	39.88
TraesCS3A01G159200.1	Wheat	nucleus	43.8	39.53
TraesCS3B01G190100.1	Wheat	nucleus	43.65	39.45
TraesCS3D01G166700.1	Wheat	nucleus	43.5	39.31
HORVU3Hr1G032230.6	Barley	nucleus, plastid	43.5	37.25
Bra007632.1-P	Field mustard	nucleus	50.8	32.99
PGSC0003DMT400020839	Potato	nucleus	34.89	29.47
PGSC0003DMT400041127	Potato	nucleus	35.18	27.02
PGSC0003DMT400048034	Potato	nucleus	29.34	26.73
PGSC0003DMT400074169	Potato	nucleus	34.45	26.7
PGSC0003DMT400009660	Potato	nucleus	33.87	24.97
PGSC0003DMT400048032	Potato	nucleus	5.84	24.54
PGSC0003DMT400025312	Potato	nucleus	34.89	21.45
PGSC0003DMT400035592	Potato	nucleus	34.16	21.33
PGSC0003DMT400006151	Potato	nucleus	34.89	20.66

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom	InterPro:Auxin_resp
InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	UniProt:M0ZGK3	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	EnsemblPlantsGene:PGSC0003DMG400000118	PGSC:PGSC0003DMG400000118	EnsemblPlants:PGSC0003DMT400000345	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF17	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI00029643A0
SEG:seg	:	:	:	:	:

Description

ARF domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400000118]

Coordinates

chr1:+:73617293..73622282

Molecular Weight (calculated)

76554.5 Da

IEP (calculated)

6.470

GRAVY (calculated)

-0.492

Length

685 amino acids

Sequence
(BLAST)

001: MGSEDLYRDL WKACAGPLVD VPRDAERVYY FPQGHIEQLE ASTNQAVNQQ IPQFNLSSKI LCRVVHVQLL AETETDEVYA QITLHPEAEQ EEPSKPDPCP
101: PDLPKRTVHS FCKILTASDT STHGGFSVLR KHANECLPQL DMTQATPTQD LVAKDLHGYE WRFKHIFRGQ PRRHLLTTGW STFVTSKRLV AGDAFVFLRD
201: DNGELRVGVR RLARQQSPIP QSVISSQSMH LGVLATASHA ITTQTRFVVY YKPRTSQFIV GLNKYLEAVS HGFSVGMRFR MRFEGEDSPE RRFTGTIVGT
301: GDISSQWSES KWRSLKIQWD EPASMVRPDR VSPWEIEPFV ASTCVDVAQP GIKSKRPRPL DLPRTEIAVA SAASPFWCPG SGPTLEVSHL GGITDVQSHD
401: NQLFWSSKQN SCLSNGVSNT SCRTHLSGAW QHSMLANGSL NLLRDSIEDN KQLITRSALL DYGSPMSSKA SSGLLHDQVN RGNKREISSG CRLFGIDLRN
501: NSNNTSTKAK EILGPNITSN CADEAPIVHD ESEIDKDQNV EHLNPSDEKK QVQLEALPKD TLKQGPTSSR TRTKVQMQGV RVGRAVDLTA LSGYDDLISE
601: LEKIFDIKGE LCPRNKWEVV YTDDEGDMML VGDDPWLEFC NMVRRIFIYS SEEVKKMTPR CKLPILSLEG EGTMPSVDSE LKAEG

Best Arabidopsis Sequence Match ( AT4G23980.1 )
(BLAST)

001: MANRGGEYLY DELWKLCAGP LVDVPQAQER VYYFPQGHME QLEASTQQVD LNTMKPLFVL PPKILCNVMN VSLQAEKDTD EVYAQITLIP VGTEVDEPMS
101: PDPSPPELQR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMTQQ TPTQELVAED VHGYQWKFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF
201: VFLRGENGEL RVGVRRANLQ QSSMPSSVIS SHSMHLGVLA TARHATQTKT MFIVYYKPRT SQFIISLNKY LEAMSNKFSV GMRFKMRFEG EDSPERRYSG
301: TVIGVKDCSP HWKDSKWRCL EVHWDEPASI SRPNKVSPWE IEPFVNSENV PKSVMLKNKR PRQVSEVSAL DVGITASNLW SSVLTQPHEF AQSCITSQWS
401: SPQQCHRDAN EDAKKSDWLN NSYSVSNVAK DSTLNDQMVS PVEQKKPETT ANYRLFGIDL MSSSLAVPEE KTAPMRPINI SKPTMDSHSD PKSEISKVSE
501: EKKQEPAEGS PKEVQSKQSS STRSRTKVQM QGVPVGRAVD LNALKGYNEL IDDIEKLFDI KGELRSRNQW EIVFTDDEGD MMLVGDDPWP EFCNMVKRIF
601: IWSKEEVKKM TPGNQLRMLL REVETTLTTT SKTDNHSN

Arabidopsis Description

ARF9Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.