Factsheet for AT3G61830.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014419.1-P	Field mustard	nucleus	79.24	85.95
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	72.26	69.94
KRH68924	Soybean	nucleus	58.47	53.17
VIT_15s0046g00290.t01	Wine grape	nucleus	61.3	52.56
GSMUA_Achr10P...	Banana	nucleus	57.48	51.87
AT4G23980.1	Thale cress	nucleus	54.82	51.72
PGSC0003DMT400000345	Potato	nucleus	58.64	51.53
GSMUA_Achr2P19760_001	Banana	nucleus	56.81	51.2
Solyc01g096070.2.1	Tomato	nucleus	58.47	51.09
GSMUA_AchrUn_...	Banana	nucleus	52.82	50.08
KRH06451	Soybean	nucleus	59.14	49.72
KRH47893	Soybean	nucleus	58.8	49.44
GSMUA_Achr7P24330_001	Banana	nucleus	54.15	48.95
AT1G59750.1	Thale cress	nucleus	50.83	46.02
Bra007632.1-P	Field mustard	nucleus	78.9	45.02
Os01t0236300-01	Rice	nucleus	48.34	41.63
EES02172	Sorghum	nucleus	46.18	40.41
AT1G35240.1	Thale cress	nucleus	39.7	40.37
AT1G34310.1	Thale cress	nucleus	39.37	39.97
AT1G34390.1	Thale cress	nucleus	39.53	39.8
AT1G35540.1	Thale cress	nucleus	39.7	39.5
AT1G34410.1	Thale cress	nucleus	39.7	39.44
AT1G35520.1	Thale cress	nucleus	37.87	38.45
Zm00001d039267_P005	Maize	nucleus	43.69	38.01
AT1G34170.3	Thale cress	nucleus	34.39	37.91
TraesCS3A01G159200.1	Wheat	nucleus	47.34	37.55
TraesCS3B01G190100.1	Wheat	nucleus	47.18	37.47
TraesCS3D01G166700.1	Wheat	nucleus	47.18	37.47
HORVU3Hr1G032230.6	Barley	nucleus, plastid	46.84	35.25
AT5G62000.1	Thale cress	nucleus	49.67	34.81
AT5G60450.1	Thale cress	nucleus	37.21	28.43
AT5G37020.1	Thale cress	nucleus	37.71	27.99
AT1G19850.1	Thale cress	nucleus	36.71	24.5
AT1G30330.3	Thale cress	nucleus	38.04	24.49
AT1G19220.1	Thale cress	nucleus	37.38	20.72
AT5G20730.1	Thale cress	nucleus	36.54	18.88

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:825356	UniProt:A0A178V7A7
ProteinID:AEE80264.1	EMBL:AF334717	EMBL:AK229945	Symbol:ARF18	ArrayExpress:AT3G61830	EnsemblPlantsGene:AT3G61830
RefSeq:AT3G61830	TAIR:AT3G61830	RefSeq:AT3G61830-TAIR-G	EnsemblPlants:AT3G61830.1	TAIR:AT3G61830.1	InterPro:AUX/IAA_dom
EMBL:AY059746	EMBL:AY070463	EMBL:AY091392	Unigene:At.17167	InterPro:Auxin_resp	InterPro:B3_DNA-bd
ProteinID:CAB71113.1	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	RefSeq:NP_567119.1	ProteinID:OAP02067.1	InterPro:PB1_dom
PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF17	UniProt:Q9C5W9	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000009DA36
SEG:seg	:	:	:	:	:

Description

ARF18Auxin response factor 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W9]

Coordinates

chr3:+:22887889..22891455

Molecular Weight (calculated)

67666.0 Da

IEP (calculated)

5.984

GRAVY (calculated)

-0.503

Length

602 amino acids

Sequence
(BLAST)

001: MASVEGDDDF GSSSSRSYQD QLYTELWKVC AGPLVEVPRA QERVFYFPQG HMEQLVASTN QGINSEEIPV FDLPPKILCR VLDVTLKAEH ETDEVYAQIT
101: LQPEEDQSEP TSLDPPIVGP TKQEFHSFVK ILTASDTSTH GGFSVLRKHA TECLPSLDMT QATPTQELVT RDLHGFEWRF KHIFRGQPRR HLLTTGWSTF
201: VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV ISSQSMHLGV LATASHAVRT TTIFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF
301: EGEESPERIF TGTIVGSGDL SSQWPASKWR SLQVQWDEPT TVQRPDKVSP WEIEPFLATS PISTPAQQPQ SKCKRSRPIE PSVKTPAPPS FLYSLPQSQD
401: SINASLKLFQ DPSLERISGG YSSNNSFKPE TPPPPTNCSY RLFGFDLTSN SPAPIPQDKQ PMDTCGAAKC QEPITPTSMS EQKKQQTSRS RTKVQMQGIA
501: VGRAVDLTLL KSYDELIDEL EEMFEIQGQL LARDKWIVVF TDDEGDMMLA GDDPWNEFCK MAKKIFIYSS DEVKKMTTKL KISSSLENEE YGNESFENRS
601: RG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.