Factsheet for AT1G34410.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G35240.1	Thale cress	nucleus	92.41	94.59
AT1G35520.1	Thale cress	nucleus	89.6	91.57
AT1G34390.1	Thale cress	nucleus	88.94	90.13
AT1G34310.1	Thale cress	nucleus	87.79	89.71
AT1G35540.1	Thale cress	nucleus	86.47	86.61
AT1G34170.3	Thale cress	nucleus	49.34	54.76
CDY53570	Canola	nucleus	44.39	53.69
Bra034234.1-P	Field mustard	nucleus	47.69	53.42
CDY21993	Canola	nucleus	48.02	53.39
CDY48583	Canola	nucleus	47.85	53.02
Bra027944.1-P	Field mustard	nucleus	47.85	52.82
CDY41720	Canola	nucleus	47.85	52.73
CDY67714	Canola	nucleus	46.04	52.54
CDY49005	Canola	nucleus	47.69	51.89
CDX94777	Canola	nucleus	47.52	51.71
CDY36940	Canola	nucleus	47.19	51.62
Bra018124.1-P	Field mustard	nucleus	46.86	51.17
Bra017362.1-P	Field mustard	nucleus	45.54	51.11
CDY55738	Canola	nucleus	45.21	50.74
CDY54111	Canola	nucleus	47.03	50.26
CDY24168	Canola	nucleus	46.37	49.91
CDX94748	Canola	endoplasmic reticulum, vacuole	30.03	49.19
CDY69758	Canola	nucleus	33.5	48.8
AT4G23980.1	Thale cress	nucleus	47.52	45.14
KRH49135	Soybean	nucleus	45.38	41.42
VIT_02s0025g01740.t01	Wine grape	nucleus	46.37	41.2
KRH00001	Soybean	nucleus	44.72	40.81
CDX94484	Canola	nucleus	42.08	40.73
AT2G46530.3	Thale cress	endoplasmic reticulum, vacuole	41.09	40.03
KRH65922	Soybean	nucleus	45.54	39.94
AT3G61830.1	Thale cress	nucleus	39.44	39.7
GSMUA_AchrUn_...	Banana	nucleus	41.58	39.69
KRH75716	Soybean	nucleus	44.88	39.31
GSMUA_Achr10P...	Banana	nucleus	42.08	38.23
GSMUA_Achr2P19760_001	Banana	nucleus	42.08	38.17
PGSC0003DMT400031965	Potato	nucleus	41.09	38.02
Solyc08g082630.2.1	Tomato	nucleus	40.26	37.89
GSMUA_Achr7P24330_001	Banana	nucleus	41.42	37.69
Solyc08g008380.2.1	Tomato	nucleus	41.25	36.6
AT1G59750.1	Thale cress	nucleus	39.93	36.39
CDX94528	Canola	nucleus	40.1	36.32
Os01t0236300-01	Rice	nucleus	39.44	34.19
EES02172	Sorghum	nucleus	37.46	32.99
CDY24162	Canola	nucleus	35.31	32.92
Zm00001d039267_P005	Maize	nucleus	35.81	31.36
TraesCS3B01G190100.1	Wheat	nucleus	39.11	31.27
TraesCS3A01G159200.1	Wheat	nucleus	39.11	31.23
TraesCS3D01G166700.1	Wheat	nucleus	38.94	31.13
HORVU3Hr1G032230.6	Barley	nucleus, plastid	38.94	29.5
AT5G62000.1	Thale cress	nucleus	41.42	29.22
AT5G60450.1	Thale cress	nucleus	34.16	26.27
AT5G37020.1	Thale cress	nucleus	33.66	25.15
AT1G30330.3	Thale cress	nucleus	35.48	22.99
AT1G19850.1	Thale cress	nucleus	33.66	22.62
AT1G19220.1	Thale cress	nucleus	35.48	19.8
AT5G20730.1	Thale cress	nucleus	32.84	17.08

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	EntrezGene:840344	ProteinID:AAF79263.1
ProteinID:AAG51897.1	ProteinID:AEE31710.1	Symbol:ARF21	ArrayExpress:AT1G34410	EnsemblPlantsGene:AT1G34410	RefSeq:AT1G34410
TAIR:AT1G34410	RefSeq:AT1G34410-TAIR-G	EnsemblPlants:AT1G34410.1	TAIR:AT1G34410.1	InterPro:AUX/IAA_dom	Unigene:At.51930
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	RefSeq:NP_174701.2	InterPro:PB1_dom
PFAM:PF02309	PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384
PANTHER:PTHR31384:SF1	UniProt:Q9C8N9	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI000034F449
SEG:seg	:	:	:	:	:

Description

ARF21Putative auxin response factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N9]

Coordinates

chr1:+:12577722..12580824

Molecular Weight (calculated)

68782.5 Da

IEP (calculated)

8.510

GRAVY (calculated)

-0.381

Length

606 amino acids

Sequence
(BLAST)

001: MESGNIVNAQ PKLSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGENVYYFP QGNIELVQAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDEIYAEI
101: TLMPDTTQVV IPTQSENRFR PLVNSFTKVL TASDTSAYGG FSVPKKHAIE CLPPLDMSQP LPAQEILAID LHDNQWRFRH NYRGTPQRHS LTTGWNEFIT
201: SKKLVKGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVIA SAKHAFDNQC IFIVVYKPRS SQFIVSYDKF LDAVNNKFNV GSRFTMRFEG
301: DDFSERRYFG TIIGVSDFSP HWKCSEWRSL EVQWDEFASF SRPNKVSPWE IEHLVPALNV PRSSLLKNKR LREVNEFGSS SSHLLPPILT QGQEIGQLSV
401: ASPMNISLRY RDTTEAAMNP SRLLMSYPVQ PMPKLNYNNQ MVTQIEENIT TKAGTNFRLF GVTLDTPPMI KDPIKQIGSD ISKLTERKKF GQSQTLRSPI
501: EIQSKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWKI AFTDSDGYEM LVGDDPWPEF CKMVKKILIY SKEEVKNLKS
601: SKSLSS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.