Factsheet for PGSC0003DMT400053380

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000345
PGSC0003DMT400020874
PGSC0003DMT400053380
PGSC0003DMT400062489

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G59750.1	PGSC0003DMT400053380	AT1G59750.1	22096563
AT1G59750.1	PGSC0003DMT400053380	AT1G59750.1	24485461
AT1G59750.1	PGSC0003DMT400020874	AT2G28350.1	22096563
AT1G59750.1	PGSC0003DMT400062489	AT2G28350.1	22096563
AT1G59750.1	PGSC0003DMT400000345	AT3G61830.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103050.2.1	Tomato	nucleus	97.09	97.09
VIT_12s0035g01800.t01	Wine grape	nucleus	77.83	75.07
KRH26266	Soybean	nucleus	74.62	73.38
KRH06026	Soybean	nucleus	73.85	72.63
KRH51289	Soybean	nucleus	72.32	70.18
CDY27291	Canola	nucleus	65.75	69.47
AT1G59750.1	Thale cress	nucleus	68.35	67.22
CDY65065	Canola	nucleus	67.74	67.02
CDY33603	Canola	nucleus	67.58	66.87
Bra035427.1-P	Field mustard	nucleus	67.89	66.77
Zm00001d050781_P001	Maize	nucleus	62.84	65.24
GSMUA_Achr9P08310_001	Banana	vacuole	48.47	65.09
EES06968	Sorghum	nucleus	66.67	64.88
GSMUA_Achr10P...	Banana	nucleus	66.67	64.69
Os02t0557200-01	Rice	nucleus	66.97	64.6
EES10850	Sorghum	nucleus	64.53	63.84
GSMUA_Achr6P07390_001	Banana	nucleus	62.84	62.75
Os04t0442000-01	Rice	nucleus	64.53	62.7
TraesCS2D01G307600.1	Wheat	nucleus	62.23	62.23
TraesCS2B01G326400.1	Wheat	nucleus	62.23	62.23
TraesCS2A01G309300.1	Wheat	nucleus	62.08	62.08
GSMUA_Achr6P12780_001	Banana	nucleus	66.06	62.07
Zm00001d016838_P001	Maize	nucleus	66.51	61.88
GSMUA_Achr6P29070_001	Banana	nucleus, vacuole	64.98	60.98
Zm00001d003601_P006	Maize	nucleus	63.46	60.85
HORVU2Hr1G076920.3	Barley	nucleus	61.31	60.03
PGSC0003DMT400031965	Potato	nucleus	49.85	49.77
PGSC0003DMT400000345	Potato	nucleus	51.83	49.49
PGSC0003DMT400036765	Potato	nucleus	53.36	41.3
PGSC0003DMT400037454	Potato	nucleus	51.68	40.77
PGSC0003DMT400020839	Potato	nucleus	39.14	31.57
PGSC0003DMT400041127	Potato	nucleus	38.38	28.14
PGSC0003DMT400074169	Potato	nucleus	36.54	27.04
PGSC0003DMT400048034	Potato	nucleus	30.58	26.6
PGSC0003DMT400009660	Potato	nucleus	36.54	25.73
PGSC0003DMT400048032	Potato	nucleus	5.81	23.31
PGSC0003DMT400025312	Potato	nucleus	38.23	22.44
PGSC0003DMT400035592	Potato	nucleus	36.39	21.7
PGSC0003DMT400006151	Potato	nucleus	38.38	21.69

Protein Annotations

EntrezGene:102604408	MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	InterPro:AUX/IAA_dom
InterPro:Auxin_resp	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009733
GO:GO:0009734	GO:GO:0009987	GO:GO:0010150	GO:GO:0042802	GO:GO:0045892	InterPro:IPR000270
InterPro:IPR003340	InterPro:IPR015300	UniProt:M1BUW3	InterPro:PB1_dom	PFAM:PF02309	PFAM:PF02362
PFAM:PF06507	EnsemblPlantsGene:PGSC0003DMG400020711	PGSC:PGSC0003DMG400020711	EnsemblPlants:PGSC0003DMT400053380	PFscan:PS50863	PFscan:PS51745
PANTHER:PTHR31384	PANTHER:PTHR31384:SF24	SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002956F7A
RefSeq:XP_006349280.1	RefSeq:XP_006349281.1	RefSeq:XP_006349282.1	RefSeq:XP_015165011.1	SEG:seg	:

Description

Auxin response factor 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400020711]

Coordinates

chr1:+:79830840..79837037

Molecular Weight (calculated)

72730.0 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.530

Length

654 amino acids

Sequence
(BLAST)

001: MAHVAANHFG GGTHPGVSAN GALYKELWHA CAGPLVTVPR EGERVYYFPQ GHMEQLEAST HQGVDQHLPS FNLPAKILCK VMNVQLRAES ETDEVYAQIT
101: LLPEQDQGEI TSPDPPPPEP EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPQLDMS QQPPWQELVA SDLHGNEWHF RHIFRGQPRR HLLTTGWSVF
201: VSAKKLVAGD AFIFLRGDSG ELRVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFIVS VNKYLEARNH KLSVGMRFKM
301: RFEGEEVPER RFSGTIVGVG DNPSSRWPDS EWRSLKVHWD EPSSILRPDR VSPWDMEPLV AATPTNTQPP QRNKRARPSV LPSPVQELPA LGMWKSPVDS
401: PSSFSYCDPS RGRDLYPSPK LSSAAKGLGY GENGSMPLST KTMYWSSQSE TCTESVAPAS EKRPANGCRL FGIELRDCPT IDESSSVAMP SAVMEDLPAP
501: SLNIDSDRNS EPSNPIPSVS CEPEKSSLRS THESQSKQIR SCTKVHMQGK AVGRAVDLTR LDSYEDLLKK LEEMFEIEGE LRGSTKKWQV VYTDNEDDMM
601: MVGDDPWHEF CSMVRKIYVY TAEEAKKLSP KIKLPVDDVK PVSDAGIVSN EEKA

Best Arabidopsis Sequence Match ( AT1G59750.4 )
(BLAST)

001: MAASNHSSGK PGGVLSDALC RELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE
101: LDQSEPTSPD APVQEPEKCT VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NSEWHFRHIF RGQPRRHLLT TGWSVFVSSK
201: KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG
301: EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST PSSQPQPPQR NKRPRPPGLP SPATGPSDGV WKSPADTPSS
401: VPLFSPPAKA ATFGHGGNKS FGVSIGSAFW PTNADSAAES FASAFNNEST EKKQTNGNVC RLFGFELVEN VNVDECFSAA SVSGAVAVDQ PVPSNEFDSG
501: QQSEPLNINQ SDIPSGSGDP EKSSLRSPQE SQSRQIRSCT KVHMQGSAVG RAIDLTRSEC YEDLFKKLEE MFDIKGELLE STKKWQVVYT DDEDDMMMVG
601: DDPWNEFCGM VRKIFIYTPE EVKKLSPKNK LAVNARMQLK ADAEENGNTE GRSSSMAGSR

Arabidopsis Description

ARF1Auxin response factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7G0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.